Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1998 |
Symbol | ydbK |
ID | 6972301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 1889352 |
End bp | 1892876 |
Gene Length | 3525 bp |
Protein Length | 1174 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643385917 |
Product | pyruvate-flavodoxin oxidoreductase |
Protein accession | YP_002270406 |
Protein GI | 209400785 |
COG category | [C] Energy production and conversion |
COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0887926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 0.942544 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTACTA TTGACGGTAA TGGCGCGGTT GCTTCGGTGG CGTTTCGCAC CAGTGAAGTT ATCGCCATCT ACCCTATTAC CCCCAGTTCC ACGATGGCAG AACAGGCTGA TGCCTGGGCC GGAAACGGCT TGAAGAACGT TTGGGGAGAC ACACCACGCG TGGTTGAAAT GCAGTCGGAA GCGGGTGCTA TCGCTACCGT GCATGGCGCT TTGCAGACGG GTGCCCTTTC AACATCGTTT ACGTCATCGC AGGGTTTGCT GCTGATGATC CCGACGCTGT ACAAACTGGC AGGCGAACTC ACACCGTTTG TCCTGCATGT AGCGGCACGT ACCGTTGCCA CACATGCACT CTCTATTTTT GGCGATCATT CCGACGTCAT GGCGGTGCGC CAGACGGGTT GCGCGATGTT GTGTGCGGCA AACGTCCAGG AAGCGCAAGA CTTTGCTCTC ATTTCGCACA TCGCGACGCT GAAAAGCCGC GTGCCATTTA TTCATTTCTT TGATGGTTTC CGTACGTCCC ACGAAATCAA TAAAATTGTC CCGCTGGCCG ATGACACTAT TCTTGATCTC ATGCCGCAGG CCGAAATTGA TGCTCATCGC GCCCGGGCGC TCAACCCGGA ACATCCCGTG ATCCGCGGTA CGTCAGCCAA TCCTGACACT TATTTCCAGT CTCGCGAAGC CACCAACCCA TGGTACAACG CGGTCTATGA CCATGTTGAA CAGGCGATGA ATGATTTCTC TGCCGCGACA GGTCGTCAGT ATCAGCCGTT TGAATATTAC GGGCATCCGC AAGCGGAACG GGTGATTATC CTGATGGGCT CTGCCATTGG CACCTGTGAA GAAGTGGTTG ATGAATTGCT AACCCGTGGC GAAAAAGTTG GCGTGCTGAA AGTTCGCCTG TACCGTCCCT TCTCCGCCAA ACACTTGCTG CAAGCTCTGC CGGGATCCGT ACGCAGCGTG GCGGTACTGG ACAGAACCAA AGAACCCGGT GCCCAGGCAG AACCGCTCTA TCTGGATGTA ATGACCGCAC TGGCAGAAGC CTTTAATAAT GGCGAGCGCG AAACTCTGCC CCGTGTCATT GGTGGGCGCT ATGGTCTTTC ATCCAAAGAA TTTGGCCCGG ACTGTGTACT GGCGGTATTT GCCGAGCTCA ACGCGGCTAA ACCGAAAGCG CGCTTTACGG TTGGTATTTA CGATGATGTG ACCAATCTGT CACTGCCGTT GCCGGAAAAC ACCCTGCCAA ACTCGGCGAA ACTGGAAGCC TTGTTTTATG GCCTTGGTAG TGATGGCAGC GTTTCCGCGA CCAAAAACAA TATCAAGATT ATCGGTAATT CCACGCCGTG GTACGCACAG GGCTATTTTG TTTACGACTC CAAAAAGGCG GGCGGCCTGA CGGTTTCTCA CCTTCGCGTG AGCGAACAGC CGATTCGTTC CGCTTATCTC ATTTCCCAGG CTGATTTTGT TGGCTGCCAC CAGTTGCAGT TTATCGATAA ATATCAGATG GCTGAGCGTT TAAAACCTGG CGGCATTTTC CTGCTCAACA CGCCGTACAG CGCAGATGAA GTGTGGTCGC GCTTGCCGCA GGAAGTTCAG GCCGTGCTAA ATCAGAAAAA AGCGCGCTTC TATGTGATTA ACGCGGCGAA AATCGCCCGC GAATGTGGCC TGGCGGCCCG TATTAATACC GTCATGCAGA TGGCTTTTTT CCATCTGACA CAAATTCTGC CTGGCGATAG CGCCCTCGCA GAATTGCAGG GTGCGATTGC CAAAAGTTAC AGTAGCAAAG GTCAGGATCT GGTGGAACGC AACTGGCAGG CTCTGGCGCT GGCGCGTGAA TCCGTAGAAG AAGTTCCGTT GCAACCGGTA AATCCGCACA GCGCCAATCG ACCGCCAGTG GTTTCCGATG CCGCCCCTGC TTTCGTGAAA ACCGTAACCG CTGCGATGCT CGCCGGGCTT GGTGATGCCC TCCCCGTTTC GGCGCTGCCG CCAGACGGCA CCTGGCCGAT GGGCACCACT CGCTGGGAAA AACGCAATAT CGCCGAAGAG ATCCCCATCT GGAAAGAGGA ACTCTGTACC CAATGTAACC ACTGCGTCGC CGCTTGCCCA CACTCAGCTA TTCGCGCAAA AGTGGTACCG CCTGAAGCGA TGGAAAACGC CCCTGCCAGC CTGCATTCGC TGGATGTGAA ATCGCGTGAT ATGCGCGGGC AGAAATATGT CTTGCAGGTG GCTCCGGAAG ATTGCACCGG TTGTAACCTG TGCGTCGAAG TTTGCCCGGC GAAAGACCGT CAGAATCCAG AGATTAAAGC CATCAATATG ATGTCGCGCC TGGAACATGT CGAAGAAGAG AAAATCAATT ACGATTTCTT CCTCAACCTG CCAGAAATCG ACCGTAGCAA ACTGGAACGT ATTGATATTC GCACATCGCA GCTGATTACA CCGCTGTTTG AATATTCCGG TGCTTGCTCC GGTTGTGGCG AGACGCCGTA TATTAAATTG CTGACTCAGC TCTATGGCGA CCGGATGTTG ATCGCTAACG CCACCGGCTG TTCTTCAATT TATGGCGGTA ACCTGCCCTC TACACCGTAT ACCACCGATG CCAACGGTCG TGGGCCGGCA TGGGCGAACT CTCTATTTGA AGATAATGCC GAATTTGGCC TTGGTTTCCG CCTGACGGTC GATCAACACC GTGTCCGCGT GCTGCGTCTG CTGGATCAAT TTGCCGATAA AATCCCGGCG GAATTACTGA CGGCGTTGAA ATCAGACGCC ACGCCAGAGG TTCGTCGTGA ACAGGTTGCA GCTTTACGCC AGCAACTCAA CGATGTTGCC GAAGCACATG AACTGCTGCG TGACGCAGAT GCACTGGTGG AAAAATCAAT CTGGCTGATT GGTGGCGACG GCTGGGCTTA CGATATCGGC TTTGGCGGTC TGGATCATGT ATTGAGTTTG ACGGAAAACG TCAACATTCT GGTGCTGGAT ACGCAATGCT ATTCCAACAC CGGTGGTCAG GCGTCGAAAG CGACACCGCT GGGTGCAGTA ACTAAATTTG GCGAGCACGG CAAACGTAAA GCGCGTAAAG ATCTTGGCGT CAGTATGATG ATGTACGGTC ATGTTTATGT GGCTCAGATT TCTCTCGGCG CGCAGCTGAA CCAGACGGTG AAAGCGATTC AGGAAGCGGA AGCGTATCCG GGACCATCGC TGATCATTGC TTATAGCCCG TGTGAAGAGC ATGGTTACGA TCTGGCACTC AGCCATGACC AGATGCGCCA ACTCACAGCT ACCGGCTTCT GGCCGCTATA TCGCTTCGAT CCGCGTCGTG CCGATGAAGG CAAACTGCCG CTGGCGCTGG ATTCACGCCC GCCGTCAGAA GCACTGGAAG AAACGTTACT TCACGAGCAA CGTTTCCGTC GTCTGAATTC GCAGCAGCCA GAAGTGGCAG AACAGTTATG GAAAGATGCT GCAGCTGATT TGCAAAAACG CTATGACTTC CTGGCACAAA TGGCCGGAAA AGCGGAAAAA AGCAACACCG ATTAA
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Protein sequence | MITIDGNGAV ASVAFRTSEV IAIYPITPSS TMAEQADAWA GNGLKNVWGD TPRVVEMQSE AGAIATVHGA LQTGALSTSF TSSQGLLLMI PTLYKLAGEL TPFVLHVAAR TVATHALSIF GDHSDVMAVR QTGCAMLCAA NVQEAQDFAL ISHIATLKSR VPFIHFFDGF RTSHEINKIV PLADDTILDL MPQAEIDAHR ARALNPEHPV IRGTSANPDT YFQSREATNP WYNAVYDHVE QAMNDFSAAT GRQYQPFEYY GHPQAERVII LMGSAIGTCE EVVDELLTRG EKVGVLKVRL YRPFSAKHLL QALPGSVRSV AVLDRTKEPG AQAEPLYLDV MTALAEAFNN GERETLPRVI GGRYGLSSKE FGPDCVLAVF AELNAAKPKA RFTVGIYDDV TNLSLPLPEN TLPNSAKLEA LFYGLGSDGS VSATKNNIKI IGNSTPWYAQ GYFVYDSKKA GGLTVSHLRV SEQPIRSAYL ISQADFVGCH QLQFIDKYQM AERLKPGGIF LLNTPYSADE VWSRLPQEVQ AVLNQKKARF YVINAAKIAR ECGLAARINT VMQMAFFHLT QILPGDSALA ELQGAIAKSY SSKGQDLVER NWQALALARE SVEEVPLQPV NPHSANRPPV VSDAAPAFVK TVTAAMLAGL GDALPVSALP PDGTWPMGTT RWEKRNIAEE IPIWKEELCT QCNHCVAACP HSAIRAKVVP PEAMENAPAS LHSLDVKSRD MRGQKYVLQV APEDCTGCNL CVEVCPAKDR QNPEIKAINM MSRLEHVEEE KINYDFFLNL PEIDRSKLER IDIRTSQLIT PLFEYSGACS GCGETPYIKL LTQLYGDRML IANATGCSSI YGGNLPSTPY TTDANGRGPA WANSLFEDNA EFGLGFRLTV DQHRVRVLRL LDQFADKIPA ELLTALKSDA TPEVRREQVA ALRQQLNDVA EAHELLRDAD ALVEKSIWLI GGDGWAYDIG FGGLDHVLSL TENVNILVLD TQCYSNTGGQ ASKATPLGAV TKFGEHGKRK ARKDLGVSMM MYGHVYVAQI SLGAQLNQTV KAIQEAEAYP GPSLIIAYSP CEEHGYDLAL SHDQMRQLTA TGFWPLYRFD PRRADEGKLP LALDSRPPSE ALEETLLHEQ RFRRLNSQQP EVAEQLWKDA AADLQKRYDF LAQMAGKAEK SNTD
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