| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_1945 |
|---|
| Symbol | pspF |
|---|
| ID | 6972105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 1841769 |
|---|
| End bp | 1842746 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643385875 |
|---|
| Product | phage shock protein operon transcriptional activator |
|---|
| Protein accession | YP_002270364 |
|---|
| Protein GI | 209399768 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAT ACAAAGATAA TTTACTCGGT GAGGCGAACA GCTTTCTCGA AGTGCTGGAA
CAGGTTTCGC ATCTCGCACC GCTGGACAAA CCGGTGCTCA TCATCGGCGA ACGCGGCACC
GGTAAAGAGC TGATCGCCAG CCGCCTGCAT TATCTCTCCT CCCGTTGGCA AGGGCCGTTT
ATTTCCCTTA ACTGCGCGGC GTTAAATGAA AATCTGCTGG ATTCCGAACT GTTTGGTCAC
GAAGCGGGGG CGTTTACCGG TGCGCAAAAA CGTCATCCAG GGAGATTTGA ACGTGCCGAT
GGCGGTACGC TATTTCTTGA TGAACTCGCT ACGGCACCGA TGATGGTGCA GGAGAAATTA
TTGCGCGTGA TTGAGTACGG TGAACTGGAG CGCGTTGGCG GCAGCCAGCC GTTGCAGGTG
AATGTGCGGT TGGTATGCGC GACGAATGCC GATCTCCCGG CGATGGTCAA TGAAGGTACT
TTTCGCGCTG ACCTGCTCGA CCGGCTGGCT TTCGATGTAG TGCAACTGCC GCCACTACGC
GAACGTGAAA GCGACATTAT GTTAATGGCG GAACACTTTG CCATCCAGAT GTGTCGGGAA
ATCAAGCTGC CTCTGTTCCC GGGGTTTACG GAGCGCGCCA GAGAAACATT GCTGAATTAT
CGTTGGCCAG GAAATATTCG TGAATTGAAA AACGTGGTGG AACGTTCAGT GTATCGCCAC
GGCACCAGCG ATTATCCGCT TGATGACATC ATTATTGATC CCTTTAAACG GCGTCCGCCT
GAAGACGCTA TCGCCGTTTC AGAAACCACC TCGCTTCCAA CACTGCCGCT GGATTTACGT
GAGTTTCAGA TGCAGCAGGA AAAAGAGTTG CTGCAACTCA GTTTGCAACA AGGGAAATAT
AACCAGAAGC GCGCAGCTGA ATTGCTGGGC TTAACCTATC ATCAGTTCCG CGCGTTGTTG
AAAAAGCACC AGATTTAG
|
|---|
| Protein sequence | MAEYKDNLLG EANSFLEVLE QVSHLAPLDK PVLIIGERGT GKELIASRLH YLSSRWQGPF
ISLNCAALNE NLLDSELFGH EAGAFTGAQK RHPGRFERAD GGTLFLDELA TAPMMVQEKL
LRVIEYGELE RVGGSQPLQV NVRLVCATNA DLPAMVNEGT FRADLLDRLA FDVVQLPPLR
ERESDIMLMA EHFAIQMCRE IKLPLFPGFT ERARETLLNY RWPGNIRELK NVVERSVYRH
GTSDYPLDDI IIDPFKRRPP EDAIAVSETT SLPTLPLDLR EFQMQQEKEL LQLSLQQGKY
NQKRAAELLG LTYHQFRALL KKHQI
|
|---|
| |