Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1933 |
Symbol | sapC |
ID | 6971203 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 1828576 |
End bp | 1829466 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643385863 |
Product | peptide ABC transporter, permease protein SapC |
Protein accession | YP_002270352 |
Protein GI | 209399657 |
COG category | [V] Defense mechanisms |
COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.0171727 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCTTACG ATAGCGTATA CAGCGAAAAG CGCCCGCCGG GCACGCTGCG TACCGCCTGG CGCAAATTTT ATAGTGACGC CTCTGCGATG GTCGGCCTGT ACGGCTGCGC GGGGCTGGCT GTACTGTGTA TGTTTGGCGG CTGGTTTGCG CCTTACGGCA TCGACCAGCA ATTTCTCGGT TACCAATTAT TGCCGCCATC ATGGTCGCGC TATGGCGAAG TTTCTTTCTT CCTGGGGACT GACGACCTCG GACGCGATGT TTTAAGCCGT TTACTGAGCG GAGCTGCGCC AACCGTGGGT GGCGCATTTG TGGTGACACT TGCCGCGACG ATCTGTGGCC TGGTACTGGG CACCTTCGCC GGGGCGACGC ACGGCCTCCG CTCAGCGGTG CTTAACCATA TTCTGGATAC CTTACTGGCG ATCCCTTCCC TGCTGTTGGC AATTATCGTT GTAGCGTTTG CCGGACCGAG TTTGTCCCAC GCTATGTTTG CTGTCTGGCT GGCGCTGCTG CCGCGTATGG TACGTTCGAT TTACAGCATG GTGCATGACG AACTGGAAAA AGAGTACGTT ATCGCCGCCC GTCTGGATGG CGCATCAACG CTGAATATTC TCTGGTTTGC TGTGATGCCT AACATCACCG CCGGGCTGGT CACCGAGATC ACCCGCGCAC TGTCGATGGC AATTCTCGAT ATCGCCGCGC TGGGCTTTCT CGATCTTGGC GCACAACTCC CCTCGCCTGA ATGGGGAGCG ATGCTCGGTG ATGCGCTGGA ACTGATTTAT GTCGCCCCGT GGACTGTCAT GCTGCCAGGT GCGGCAATTA TGATTAGCGT GCTGTTGGTT AACCTCCTTG GCGACGGTGT CCGTCGTGCA ATTATTGCGG GGGTGGAATA A
|
Protein sequence | MPYDSVYSEK RPPGTLRTAW RKFYSDASAM VGLYGCAGLA VLCMFGGWFA PYGIDQQFLG YQLLPPSWSR YGEVSFFLGT DDLGRDVLSR LLSGAAPTVG GAFVVTLAAT ICGLVLGTFA GATHGLRSAV LNHILDTLLA IPSLLLAIIV VAFAGPSLSH AMFAVWLALL PRMVRSIYSM VHDELEKEYV IAARLDGAST LNILWFAVMP NITAGLVTEI TRALSMAILD IAALGFLDLG AQLPSPEWGA MLGDALELIY VAPWTVMLPG AAIMISVLLV NLLGDGVRRA IIAGVE
|
| |