| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_1906 |
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| Symbol | topA |
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| ID | 6969066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 1798769 |
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| End bp | 1801366 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643385839 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002270328 |
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| Protein GI | 209398456 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.176274 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000000000000101765 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGTAAAG CTCTTGTCAT CGTTGAGTCC CCGGCAAAAG CCAAAACGAT CAACAAGTAT
CTGGGTAGTG ACTACGTGGT GAAATCCAGC GTCGGTCACA TCCGCGATTT GCCGACCAGT
GGCTCAGCTG CCAAAAAGAG TGCCGACTCT ACCTCCACCA AGACGGCTAA AAAGCCTAAA
AAGGATGAAC GTGGCGCTCT CGTCAACCGT ATGGGGGTTG ACCCGTGGCA CAATTGGGAG
GCGCACTATG AAGTGTTGCC TGGTAAAGAG AAGGTCGTCT CTGAACTGAA ACAACTGGCT
GAAAAAGCCG ACCACATCTA TCTCGCAACC GACCTTGACC GCGAAGGGGA AGCCATTGCA
TGGCACCTGC GGGAAGTGAT TGGTGGTGAT GATGCGCGCT ATAGCCGAGT GGTGTTTAAC
GAAATTACTA AAAACGCGAT CCGCCAGGCA TTTAACAAAC CGGGTGAGCT GAATATTGAT
CGTGTTAATG CCCAGCAGGC GCGTCGCTTT ATGGACCGCG TGGTGGGGTA TATGGTTTCG
CCGCTGCTAT GGAAAAAGAT CGCTCGTGGT CTGTCTGCCG GTCGTGTGCA GTCGGTGGCA
GTCCGCCTGG TGGTCGAGCG TGAGCGTGAA ATTAAAGCGT TCGTGCCGGA AGAGTTCTGG
GAAGTCGATG CCAGCACGAC CACGCCATCT GGTGAAGCGT TGGCGTTGCA GGTGACTCAT
CAGAACGACA AACCGTTCCG TCCGGTCAAC AAAGAACAAA CTCAGGCTGC GGTAAGTCTG
CTGGAAAAAG CGCGCTACAG CGTGCTGGAA CGTGAAGACA AACCGACAAC CAGTAAACCT
GGCGCTCCTT TTATTACCTC TACGCTGCAA CAAGCTGCCA GCACCCGTCT TGGATTTGGC
GTGAAAAAAA CCATGATGAT GGCGCAGCGT TTGTATGAAG CAGGCTATAT CACTTACATG
CGTACCGACT CCACTAACCT GAGTCAGGAC GCGGTAAATA TGGTTCGCGG TTATATCAGC
GATAATTTTG GTAAGAAATA TCTGCCGGAA AGTCCGAATC AGTACGCCAG CAAAGAAAAC
TCACAGGAAG CGCACGAAGC GATTCGTCCT TCTGACGTCA ATGTGATGGC GGAATCGCTG
AAGGATATGG AAGCAGATGC GCAGAAACTG TACCAGTTAA TCTGGCGTCA GTTCGTTGCC
TGCCAGATGA CCCCAGCGAA ATATGACTCC ACGACGCTGA CCGTTGGTGC GGGCGATTTC
CGCCTGAAAG CACGCGGTCG TATTTTGCGC TTTGATGGCT GGACGAAAGT GATGCCTGCA
CTGCGTAAAG GCGATGAAGA TCGTATCTTA CCTGCAGTCG ATAAAGGCGA TGCTCTGACG
CTCGTTGAAC TGACACCAGC CCAGCACTTT ACCAAGCCGC CAGCCCGTTT CAGTGAAGCA
TCGCTGGTTA AAGAACTGGA AAAACGTGGT ATCGGTCGTC CGTCTACCTA TGCGTCGATC
ATTTCGACCA TTCAGGATCG TGGCTATGTG CGAGTAGAAA ATCGTCGTTT CTATGCGGAA
AAAATGGGCG AAATCGTCAC CGATCGCCTG GAAGAGAATT TCCGCGAGTT AATGAACTAC
GACTTCACCG CGCAGATGGA AAACAGCCTT GACCAGGTGG CAAATCACGA AGCAGAGTGG
AAAGCTGTAC TGGATCACTT CTTCTCGGAT TTCACTCAGC AGTTAGATAA AGCTGAAAAA
GATCCGGAAG AGGGGGGTAT GCGTCCGAAC CAGATGGTTC TGACCAGCAT CGACTGCCCG
ACCTGTGGTC GCAAAATGGG GATTCGCACA GCGAGCACCG GGGTATTCCT TGGCTGTTCT
GGCTATGCGC TGCCGCCGAA AGAGCGTTGC AAAACAACCA TTAACCTGGT GCCGGAAAAC
GAAGTGCTGA ACGTGCTGGA AGGCGAAGAC GCTGAAACCA ACGCGCTGCG CGCAAAACGT
CGTTGCCCCA AATGCGGCAC GGCGATGGAC AGCTATCTCA TCGATCCGAA ACGTAAGTTG
CATGTCTGTG GTAATAACCC AACCTGCGAC GGTTACGAGA TCGAAGAGGG CGAATTCCGC
ATTAAAGGTT ATGACGGCCC GATCGTTGAG TGTGAAAAAT GTGGTTCTGA AATGCACCTG
AAAATGGGGC GTTTCGGTAA ATATATGGCC TGCACCAACG AAGAGTGTAA AAACACGCGT
AAGATTTTAC GTAACGGCGA AGTGGCTCCA CCGAAAGAAG ATCCGGTACC ATTACCGGAG
CTGCCGTGCG AAAAATCAGA TGCCTATTTC GTGCTGCGTG ACGGTGCTGC CGGTGTGTTC
CTGGCGGCCA ATACCTTCCC GAAATCGCGT GAAACGCGTG CGCCGCTGGT GGAAGAGCTG
TATCGCTTCC GCGATCGTCT GCCGGAAAAA CTGCGTTATC TGGCCGATGC GCCGCAGCAG
GATCCGGAAG GTAATAAGAC TATGGTTCGC TTTAGCCGTA AAACCAAACA GCAATATGTC
TCTTCGGAAA AAGACGGAAA GGCGACTGGC TGGTCAGCAT TTTATGTTGA TGGCAAATGG
GTTGAAGGGA AAAAATAA
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| Protein sequence | MGKALVIVES PAKAKTINKY LGSDYVVKSS VGHIRDLPTS GSAAKKSADS TSTKTAKKPK
KDERGALVNR MGVDPWHNWE AHYEVLPGKE KVVSELKQLA EKADHIYLAT DLDREGEAIA
WHLREVIGGD DARYSRVVFN EITKNAIRQA FNKPGELNID RVNAQQARRF MDRVVGYMVS
PLLWKKIARG LSAGRVQSVA VRLVVERERE IKAFVPEEFW EVDASTTTPS GEALALQVTH
QNDKPFRPVN KEQTQAAVSL LEKARYSVLE REDKPTTSKP GAPFITSTLQ QAASTRLGFG
VKKTMMMAQR LYEAGYITYM RTDSTNLSQD AVNMVRGYIS DNFGKKYLPE SPNQYASKEN
SQEAHEAIRP SDVNVMAESL KDMEADAQKL YQLIWRQFVA CQMTPAKYDS TTLTVGAGDF
RLKARGRILR FDGWTKVMPA LRKGDEDRIL PAVDKGDALT LVELTPAQHF TKPPARFSEA
SLVKELEKRG IGRPSTYASI ISTIQDRGYV RVENRRFYAE KMGEIVTDRL EENFRELMNY
DFTAQMENSL DQVANHEAEW KAVLDHFFSD FTQQLDKAEK DPEEGGMRPN QMVLTSIDCP
TCGRKMGIRT ASTGVFLGCS GYALPPKERC KTTINLVPEN EVLNVLEGED AETNALRAKR
RCPKCGTAMD SYLIDPKRKL HVCGNNPTCD GYEIEEGEFR IKGYDGPIVE CEKCGSEMHL
KMGRFGKYMA CTNEECKNTR KILRNGEVAP PKEDPVPLPE LPCEKSDAYF VLRDGAAGVF
LAANTFPKSR ETRAPLVEEL YRFRDRLPEK LRYLADAPQQ DPEGNKTMVR FSRKTKQQYV
SSEKDGKATG WSAFYVDGKW VEGKK
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