Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1731 |
Symbol | oppC |
ID | 6969603 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 1668177 |
End bp | 1669082 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 643385684 |
Product | oligopeptide ABC transporter, permease protein OppC |
Protein accession | YP_002270176 |
Protein GI | 209399648 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.1425 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 0.136954 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAGTA AGAAAAACAG CGAGACGCTG GAAAATTTCA GTGAAAAGCT GGAGGTCGAA GGGCGCAGCT TGTGGCAGGA CGCACGTCGA CGTTTTATGC ATAACCGTGC GGCGGTTGCA AGTCTGATAG TGCTGGTGCT GATCGCGTTA TTTGTAATCC TGGCACCGAT GCTTTCGCAG TTTGCCTATG ACGATACTGA CTGGGCGATG ATGTCCAGCG CCCCGGATAT GGAGTCCGGT CACTACTTTG GTACTGACTC ATCCGGTCGC GACCTGCTTG TGCGCGTTGC GATTGGCGGA CGTATCTCAC TCATGGTCGG TGTTGCTGCG GCACTGGTGG CAGTGGTCGT GGGGACACTT TATGGTTCGC TTTCCGGTTA TCTGGGCGGT AAAGTGGATT CGGTAATGAT GCGTTTGCTG GAAATCCTCA ACTCCTTCCC ATTCATGTTC TTCGTCATTT TGCTGGTGAC CTTTTTCGGT CAAAACATCC TGCTGATTTT CGTGGCGATA GGCATGGTTT CCTGGCTGGA TATGGCTCGT ATTGTGCGTG GGCAAACCCT GAGTCTGAAG CGCAAAGAGT TTATTGAGGC GGCACAAGTT GGCGGTGTAT CGACGTCGGG CATTGTTATT CGCCACATTG TGCCGAACGT ACTCGGTGTG GTGGTGGTCT ACGCATCGCT ACTGGTGCCC AGCATGATCC TCTTTGAATC TTTCCTTAGC TTCCTGGGGT TGGGTACGCA AGAGCCGTTA AGCAGCTGGG GGGCATTGCT GAGTGATGGC GCGAACTCAA TGGAAGTCTC TCCATGGTTA CTGTTGTTCC CAGCGGGATT CCTCGTGGTG ACGCTGTTTT GTTTCAACTT TATCGGCGAT GGCTTGCGTG ATGCCCTCGA CCCGAAAGAT CGTTAA
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Protein sequence | MLSKKNSETL ENFSEKLEVE GRSLWQDARR RFMHNRAAVA SLIVLVLIAL FVILAPMLSQ FAYDDTDWAM MSSAPDMESG HYFGTDSSGR DLLVRVAIGG RISLMVGVAA ALVAVVVGTL YGSLSGYLGG KVDSVMMRLL EILNSFPFMF FVILLVTFFG QNILLIFVAI GMVSWLDMAR IVRGQTLSLK RKEFIEAAQV GGVSTSGIVI RHIVPNVLGV VVVYASLLVP SMILFESFLS FLGLGTQEPL SSWGALLSDG ANSMEVSPWL LLFPAGFLVV TLFCFNFIGD GLRDALDPKD R
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