| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_1485 |
|---|
| Symbol | |
|---|
| ID | 6970395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 1465336 |
|---|
| End bp | 1465977 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643385456 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_002269950 |
|---|
| Protein GI | 209400489 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
|---|
| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.757345 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0000742206 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAA TGAGTCGCTA CGCCTTGATT ACCGCGCTGG CGATGTTTCT CGCCGGGTGT
GTGGGGCAAC GTGAACCTGC ACCGGTAGAA GAAGTGAAAC CAGCGCCGGA ACAACCAGCC
GAGCCACAAC AGCCTGTCCC CACAGTGCCC TCGGTGCCGA CGATCCCGCA GCAGCCAGGC
CCAATTGAGC ACGAAGATCA AACTGCACCG CCTGCGCCGC ATATTCGCCA TTATGACTGG
AATGGCGCAA TGCAGCCGAT GGTCAGTAAG ATGCTTGGGG CTGACGGGGT GACTGCGGGT
AGCGTCCTGC TGGTTGATAG CGTTAACAAC CGTACTAACG GTTCGCTGAA TGCCGCAGAA
GCGACCGAAA CGCTGCGAAA TGCGCTGGCT AATAACGGGA AATTTACCCT GGTTTCCGCC
CAGCAGCTGT CGATGGCTAA GCAACAGTTA GGTTTGTCGC CGCAGGATAG TTTAGGCACC
CGTAGTAAAG CCATAGGCAT TGCCCGCAAT GTCGGCGCTC ATTACGTGCT GTACTCCAGC
GCCTCTGGCA ACGTTAACGC TCCGACCCTA CAAATGCAGC TGATGCTGGT GCAGACGGGC
GAAATTATCT GGTCAGGTAA AGGTGCCGTT TCGCAGCAAT AA
|
|---|
| Protein sequence | MTKMSRYALI TALAMFLAGC VGQREPAPVE EVKPAPEQPA EPQQPVPTVP SVPTIPQQPG
PIEHEDQTAP PAPHIRHYDW NGAMQPMVSK MLGADGVTAG SVLLVDSVNN RTNGSLNAAE
ATETLRNALA NNGKFTLVSA QQLSMAKQQL GLSPQDSLGT RSKAIGIARN VGAHYVLYSS
ASGNVNAPTL QMQLMLVQTG EIIWSGKGAV SQQ
|
|---|
| |