| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_1246 |
|---|
| Symbol | |
|---|
| ID | 6969119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 1254110 |
|---|
| End bp | 1254910 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643385239 |
|---|
| Product | putative rutD protein |
|---|
| Protein accession | YP_002269734 |
|---|
| Protein GI | 209397669 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | [TIGR03611] pyrimidine utilization protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTT CACTCTCACC TCCCCCTTAT GCTGATGCGC CCGTAGTGGT GTTGATTTCG
GGTCTTGGCG GTAGCGGCAG TTACTGGTTA CCGCAACTGG CGGTGCTGGA GCAGGAGTAT
CAGGTAGTCT GTTACGACCA GCGCGGCACC GGCAATAATC CCGACACGCT GGCAGAAGAT
TACAGTATCA CCCAGATGGC AGCGGAACTG CATCAGGCGC TGGTAGCCGC AGGGATTGAG
CATTACGCAG TGGTCGGCCA TGCGCTCGGT GCGCTGGTGG GAATGCAGCT GGCGCTGGAT
CATCCCGCGT CGGTAACTGT GCTGGTCTGC GTTAACGGCT GGCTACGAAT AAACGCCCAT
ACGCGCCGCT GTTTTCAGGT TCGCGAACGA TTACTGTATA GCGGTGGCGC GCAGGCATGG
GTGGAAGCGC AGCCGTTGTT CCTCTATCCC GCCGACTGGA TGGCGGCCCG CGCACCTCGC
CTTGAGGCAG AAGACGCGCT GGCACTGGCG CATTTTCAGG GCAAAAATAA TTTACTGCGT
CGACTTAACG CCCTCAAACG CGCTGACTTT AGTCACCATG CGGATCGCAT CCGCTGCCCG
GTGCAAATCA TCTGCGCCAG TGATGATCTG CTGGTGCCAT CAGCATGTTC CAGTGAACTT
CATGCCGCCC TGCCCGATAG CCAGAAAATG GTGATGCGCT ATGGCGGACA CGCCTGCAAC
GTGACCGATC CCGAAACGTT TAATGCTCTG TTACTCAACG GGCTTGCCAG CCTGTTACAT
CACCGTGAAG CCGCCCTGTA A
|
|---|
| Protein sequence | MKLSLSPPPY ADAPVVVLIS GLGGSGSYWL PQLAVLEQEY QVVCYDQRGT GNNPDTLAED
YSITQMAAEL HQALVAAGIE HYAVVGHALG ALVGMQLALD HPASVTVLVC VNGWLRINAH
TRRCFQVRER LLYSGGAQAW VEAQPLFLYP ADWMAARAPR LEAEDALALA HFQGKNNLLR
RLNALKRADF SHHADRIRCP VQIICASDDL LVPSACSSEL HAALPDSQKM VMRYGGHACN
VTDPETFNAL LLNGLASLLH HREAAL
|
|---|
| |