Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_1075 |
Symbol | msbA |
ID | 6971625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | + |
Start bp | 1099619 |
End bp | 1101367 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643385087 |
Product | lipid transporter ATP-binding/permease protein |
Protein accession | YP_002269586 |
Protein GI | 209398481 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.220185 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATAACG ACAAAGATCT CTCTACGTGG CAGACATTCC GCCGACTGTG GCCAACCATT GCGCCTTTTA AAGCGGGTCT GATCGTGGCG GGCGTAGCGT TAATCCTCAA CGCAGCCAGC GATACCTTCA TGTTATCGCT CCTTAAGCCA CTTCTTGATG ATGGCTTTGG TAAAACAGAT CGCTCCGTGC TGGTGTGGAT GCCGCTGGTG GTGATCGGGC TGATGATTTT GCGTGGTATC ACCAGCTATG TCTCCAGCTA CTGTATCTCC TGGGTATCAG GAAAGGTGGT AATGACCATG CGTCGCCGCC TGTTTGGTCA CATGATGGGA ATGCCGGTTT CATTCTTTGA CAAACAGTCA ACGGGTACGC TGTTGTCACG TATCACCTAC GATTCCGAAC AGGTTGCTTC TTCCTCTTCC GGCGCACTGA TTACTGTTGT GCGTGAAGGT GCGTCGATCA TCGGCCTGTT CATCATGATG TTCTATTACA GTTGGCAATT GTCGATCATT TTGATTGTGC TGGCACCGAT TGTTTCGATT GCGATTCGCG TAGTATCGAA GCGTTTTCGC AACATCAGTA AAAACATGCA GAACACCATG GGGCAGGTGA CCACCAGCGC TGAACAAATG CTGAAAGGCC ATAAAGAAGT ATTGATTTTC GGTGGTCAGG AAGTGGAAAC GAAACGCTTC GATAAAGTCA GCAACCGAAT GCGTCTTCAG GGGATGAAAA TGGTTTCAGC CTCTTCCATC TCTGATCCGA TCATTCAGCT GATCGCCTCT TTGGCGCTGG CGTTTGTTCT GTATGCGGCG AGCTTCCCAA GTGTCATGGA TAGCCTGACT GCCGGTACGA TTACCGTTGT TTTCTCTTCA ATGATTGCAC TGATGCGTCC GCTGAAATCG CTGACTAACG TTAACGCCCA GTTCCAGCGC GGTATGGCGG CTTGTCAGAC ACTGTTTACC ATTCTGGACA GTGAGCAGGA GAAAGACGAA GGTAAGCGCG TGATCGAGCG TGCGACTGGC GACGTGGAAT TCCGCAACGT CACCTTTACT TATCCGGGAC GTGACGTACC CGCATTGCGT AACATCAACC TGAAAATTCC GGCAGGGAAA ACGGTCGCTC TGGTTGGACG CTCTGGTTCA GGTAAATCAA CCATCGCCAG CCTGATCACG CGTTTTTACG ATATTGATGA AGGCGAAATC CTGATGGATG GTCACGATCT GCGCGAGTAT ACCCTGGCGT CGTTGCGTAA CCAGGTTGCT CTGGTGTCGC AGAATGTCCA TCTGTTTAAC GATACGGTTG CTAACAACAT TGCTTACGCA CGAACTGAAC AGTACAGCCG TGAGCAAATT GAAGAAGCGG CGCGTATGGC CTACGCCATG GACTTCATCA ATAAGATGGA TAACGGTCTC GATACAGTGA TTGGTGAAAA CGGCGTACTG CTCTCTGGCG GTCAGCGTCA GCGTATTGCT ATCGCTCGAG CCTTGTTGCG TGATAGCCCG ATTCTGATTC TGGATGAAGC TACCTCGGCT CTGGATACCG AATCCGAACG TGCGATTCAG GCGGCACTGG ATGAGTTGCA GAAAAACCGT ACCTCTCTGG TGATTGCCCA CCGCTTGTCT ACCATTGAAA AGGCAGACGA AATCGTGGTC GTCGAGGATG GTGTCATTGT GGAACGCGGT ACGCATAACG ATTTGCTTGA GCACCGCGGC GTTTACGCGC AACTTCACAA AATGCAGTTT GGCCAATGA
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Protein sequence | MHNDKDLSTW QTFRRLWPTI APFKAGLIVA GVALILNAAS DTFMLSLLKP LLDDGFGKTD RSVLVWMPLV VIGLMILRGI TSYVSSYCIS WVSGKVVMTM RRRLFGHMMG MPVSFFDKQS TGTLLSRITY DSEQVASSSS GALITVVREG ASIIGLFIMM FYYSWQLSII LIVLAPIVSI AIRVVSKRFR NISKNMQNTM GQVTTSAEQM LKGHKEVLIF GGQEVETKRF DKVSNRMRLQ GMKMVSASSI SDPIIQLIAS LALAFVLYAA SFPSVMDSLT AGTITVVFSS MIALMRPLKS LTNVNAQFQR GMAACQTLFT ILDSEQEKDE GKRVIERATG DVEFRNVTFT YPGRDVPALR NINLKIPAGK TVALVGRSGS GKSTIASLIT RFYDIDEGEI LMDGHDLREY TLASLRNQVA LVSQNVHLFN DTVANNIAYA RTEQYSREQI EEAARMAYAM DFINKMDNGL DTVIGENGVL LSGGQRQRIA IARALLRDSP ILILDEATSA LDTESERAIQ AALDELQKNR TSLVIAHRLS TIEKADEIVV VEDGVIVERG THNDLLEHRG VYAQLHKMQF GQ
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