| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_0631 |
|---|
| Symbol | |
|---|
| ID | 6969773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 653940 |
|---|
| End bp | 654482 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643384669 |
|---|
| Product | type-1 fimbrial protein homolog |
|---|
| Protein accession | YP_002269183 |
|---|
| Protein GI | 209396494 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.168996 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.298976 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA GATTTATTTC GTCTGCGCTG GCTGCCGCAC TATTCGCCGC TACGGGTAGT
TATGCTGCCG TTGTAGATGG CGGTACAATT CACTTTGAAG GTGAACTGGT GAATGCTGCC
TGTTCAGTGA ATACTGACTC GGCAGACCAG GTTGTCACAC TCGGTCAATA TCGTACCGAT
ATTTTCAATG CTGTTGGTAA TACCTCTGCA TTAATTCCAT TCACCATTCA GTTGAACGAC
TGCGATCCTG TTGTTGCCGC TAATGCTGCC GTTGCATTTT CTGGTCAGGC TGATGCAATC
AATGATAATT TATTGGCCAT TGCATCCAGT ACCAATACAA CAACAGCAAC GGGTGTCGGT
ATTGAAATAC TTGATAATAC ATCCGCAATT CTCAAACCTG ATGGGAATAG CTTCTCAACC
AACCAGAACT TGATCCCCGG GACCAACGTT CTTCATTTTT CTGCACGTTA TAAAGGCACC
GGTACAAGTG CATCAGCAGG GCAAGCAAAT GCTGACGCGA CTTTTATTAT GAGATACGAA
TAA
|
|---|
| Protein sequence | MKLRFISSAL AAALFAATGS YAAVVDGGTI HFEGELVNAA CSVNTDSADQ VVTLGQYRTD
IFNAVGNTSA LIPFTIQLND CDPVVAANAA VAFSGQADAI NDNLLAIASS TNTTTATGVG
IEILDNTSAI LKPDGNSFST NQNLIPGTNV LHFSARYKGT GTSASAGQAN ADATFIMRYE
|
|---|
| |