| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_0504 |
|---|
| Symbol | ispA |
|---|
| ID | 6969331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 509841 |
|---|
| End bp | 510740 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643384552 |
|---|
| Product | geranyltranstransferase |
|---|
| Protein accession | YP_002269066 |
|---|
| Protein GI | 209397720 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTTC CGCAGCAACT CGAAGCCTGC GTTAAGCAGG CCAACCAGGC GCTGAGCCGT
TTTATCGCCC CACTGCCCTT TCAGAACACT CCCGTGGTCG AAACCATGCA GTATGGCGCA
TTATTAGGTG GTAAGCGCCT GCGACCTTTC CTGGTTTATG CCACCGGTCA TATGTTCGGC
GTTAGCACAA ACACGCTGGA CGCACCCGCT GCCGCCGTAG AGTGTATCCA CGCTTACTCA
TTAATTCATG ATGATTTACC GGCGATGGAT GATGACGATC TGCGTCGCGG CTTGCCGACC
TGCCATGTGA AGTTTGGCGA AGCGAACGCG ATTCTCGCTG GCGACGCTTT ACAAACGCTG
GCGTTCTCGA TTTTAAGCGA TGCTGATATG CCAGAAGTGT CGGATCGCGA CAGAATTTCG
ATGATTTCTG AACTGGCGAG CGCCAGCGGT ATTGCCGGAA TGTGTGGTGG TCAGGCGTTG
GATTTAGACG CGGAAGGCAA ACACGTACCT CTGGACGCGC TTGAGCGTAT TCATCGTCAT
AAAACAGGCG CATTAATTCG CGCCGCCGTT CGCCTTGGTG CATTAAGCGC CGGAGATAAA
GGACGTCGTG CTCTACCAGT ACTCGACAAG TACGCAGAGA GCATCGGCCT TGCCTTCCAG
GTTCAGGATG ACATCCTGGA TGTGGTGGGA GATACTGCAA CGTTGGGAAA ACGTCAGGGT
GCCGACCAGC AGCTTGGCAA AAGTACCTAC CCTGCACTCC TGGGTCTTGA GCAAGCCCGG
AAGAAAGCCC AGGATCTGAT CGACGATGCC CGCCAGTCGC TGAAACAACT GGCTGAACAG
TCGATCGATA CTTCGGCACT GGAAGCGCTA GCGGACTACA TCATCCAGCG TAATAAATAA
|
|---|
| Protein sequence | MDFPQQLEAC VKQANQALSR FIAPLPFQNT PVVETMQYGA LLGGKRLRPF LVYATGHMFG
VSTNTLDAPA AAVECIHAYS LIHDDLPAMD DDDLRRGLPT CHVKFGEANA ILAGDALQTL
AFSILSDADM PEVSDRDRIS MISELASASG IAGMCGGQAL DLDAEGKHVP LDALERIHRH
KTGALIRAAV RLGALSAGDK GRRALPVLDK YAESIGLAFQ VQDDILDVVG DTATLGKRQG
ADQQLGKSTY PALLGLEQAR KKAQDLIDDA RQSLKQLAEQ SIDTSALEAL ADYIIQRNK
|
|---|
| |