| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_0503 |
|---|
| Symbol | dxs |
|---|
| ID | 6970204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 507954 |
|---|
| End bp | 509816 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643384551 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_002269065 |
|---|
| Protein GI | 209398295 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTG ATATTGCCAA ATACCCGACC CTGGCACTGG TCGACTCCAC CCAGGAGCTA
CGACTGTTGC CAAAAGAGAG TTTACCGAAA CTCTGCGACG AACTGCGCCG CTATTTACTC
GACAGCGTGA GCCGTTCCAG CGGGCACTTC GCCTCCGGGC TGGGCACGGT CGAACTGACC
GTGGCGCTGC ACTATGTCTA TAACACCCCG TTTGACCAAT TGATTTGGGA TGTGGGGCAT
CAGGCTTATC CGCATAAAAT TTTGACCGGA CGCCGCGACA AAATCGGCAC CATCCGTCAG
AAAGGCGGTC TACACCCGTT CCCGTGGCGC GGCGAAAGCG AATATGACGT ATTAAGCGTC
GGGCATTCAT CAACCTCCAT CAGTGCCGGA ATTGGTATTG CGGTTGCTGC CGAGAAAGAA
GGCAAAAATC GCCGCACCGT CTGTGTGATT GGCGACGGCG CGATTACCGC AGGCATGGCG
TTTGAAGCGA TGAATCACGC GGGCGATATT CGTCCTGATA TGCTGGTGGT CCTCAACGAC
AATGAAATGT CGATTTCCGA AAATGTTGGC GCGCTTAACA ACCATCTGGC GCAGCTGCTT
TCCGGTAAGC TTTACTCTTC ACTGCGCGAA GGCGGGAAAA AAGTTTTCTC TGGCGTTCCG
CCAATTAAAG AGCTGCTCAA ACGTACCGAA GAACATATTA AAGGCATGGT GGTGCCTGGC
ACGTTGTTTG AAGAGCTGGG CTTTAACTAC ATCGGCCCGG TTGACGGTCA CGATGTGCTG
GGGCTTATCA CCACGCTGAA GAACATGCGC GACCTGAAAG GCCCGCAGTT CCTGCATATC
ATGACCAAAA AAGGTCGTGG TTATGAACCG GCAGAAAAAG ACCCAATCAC CTTCCACGCC
GTGCCTAAAT TTGATCCCTC CAGCGGTTGT TTGCCGAAAA GTAGCGGTGG TTTACCAAGC
TATTCAAAAA TCTTTGGCGA CTGGTTGTGC GAAACGGCAG CGAAAGATAA CAAACTGATG
GCGATTACTC CGGCGATGCG TGAAGGTTCC GGCATGGTCG AGTTTTCACG TAAATTCCCG
GATCGCTATT TTGATGTAGC GATTGCCGAG CAACACGCGG TGACCTTTGC CGCCGGTCTG
GCGATTGGTG GCTACAAACC GATCGTGGCA ATTTACTCCA CCTTCCTGCA ACGCGCCTAT
GATCAGGTGC TGCATGACGT GGCAATTCAA AAACTCCCGG TCCTGTTCGC CATCGACCGC
GCGGGCATTG TTGGTGCTGA CGGTCAAACC CACCAGGGCG CTTTTGATCT CTCTTACCTG
CGCTGCATAC CGGAAATGGT CATTATGACC CCGAGCGATG AAAACGAATG TCGCCAGATG
CTCTATACCG GCTATCACTA TAACGATGGC CCGTCAGCGG TGCGCTACCC GCGTGGCAAC
GCGGTCGGCG TGGAACTGAC GCCGCTGGAA AAACTACCAA TTGGCAAAGG CATTGTGAAG
CGTCGTGGCG AGAAACTGGC GATCCTTAAC TTTGGTACGC TGATGCCAGA AGCGGCGAAA
GTCGCCGAAT CGCTGAACGC CACGCTGGTC GATATGCGTT TTGTGAAACC GCTTGATGAA
ACGTTAATTC TGGAAATGGC CGCCAGTCAT GAAGCACTGG TTACCGTAGA AGAAAACGCC
ATTATGGGCG GTGCAGGCAG CGGAGTGAAC GAAGTGCTGA TGGCCCATCG TAAACCAGTA
CCCGTGCTGA ACATTGGCCT GCCGGACTTC TTTATTCCGC AAGGAACTCA GGAAGAAATG
CGCGCCGAAC TCGGCCTCGA TGCCGCCGGT ATGGAAGCCA AAATCAAGGC CTGGCTGGCA
TAA
|
|---|
| Protein sequence | MSFDIAKYPT LALVDSTQEL RLLPKESLPK LCDELRRYLL DSVSRSSGHF ASGLGTVELT
VALHYVYNTP FDQLIWDVGH QAYPHKILTG RRDKIGTIRQ KGGLHPFPWR GESEYDVLSV
GHSSTSISAG IGIAVAAEKE GKNRRTVCVI GDGAITAGMA FEAMNHAGDI RPDMLVVLND
NEMSISENVG ALNNHLAQLL SGKLYSSLRE GGKKVFSGVP PIKELLKRTE EHIKGMVVPG
TLFEELGFNY IGPVDGHDVL GLITTLKNMR DLKGPQFLHI MTKKGRGYEP AEKDPITFHA
VPKFDPSSGC LPKSSGGLPS YSKIFGDWLC ETAAKDNKLM AITPAMREGS GMVEFSRKFP
DRYFDVAIAE QHAVTFAAGL AIGGYKPIVA IYSTFLQRAY DQVLHDVAIQ KLPVLFAIDR
AGIVGADGQT HQGAFDLSYL RCIPEMVIMT PSDENECRQM LYTGYHYNDG PSAVRYPRGN
AVGVELTPLE KLPIGKGIVK RRGEKLAILN FGTLMPEAAK VAESLNATLV DMRFVKPLDE
TLILEMAASH EALVTVEENA IMGGAGSGVN EVLMAHRKPV PVLNIGLPDF FIPQGTQEEM
RAELGLDAAG MEAKIKAWLA
|
|---|
| |