Gene ECH74115_0488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH74115_0488 
SymbolsecD 
ID6966680 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli O157:H7 str. EC4115 
KingdomBacteria 
Replicon accessionNC_011353 
Strand
Start bp494861 
End bp496708 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content53% 
IMG OID643384536 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002269050 
Protein GI209400898 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTAAACC GTTATCCTTT GTGGAAGTAC GTCATGCTGA TCGTGGTGAT TGTCATCGGT 
CTGCTGTATG CGCTTCCCAA CCTGTTTGGT GAGGATCCGG CTGTTCAGAT CACTGGTGCG
CGCGGAGTCG CCGCCAGTGA GCAAACGCTG ATCCAGGTCC AGAAAACGTT ACAAGAAGAA
AAAATAACTG CTAAGTCTGT GGCACTGGAA GAGGGCGCTA TTCTTGCGCG CTTCGACTCC
ACTGACACCC AGCTGCGCGC TCGTGAAGCA TTAATGGGCG TTATGGGTGA CAAATACGTC
GTGGCGCTTA ACCTTGCCCC GGCAACGCCG CGCTGGCTGG CAGCTATTCA CGCTGAGCCG
ATGAAGCTCG GCCTTGACCT GCGTGGCGGC GTTCACTTCC TGATGGAAGT GGATATGGAC
ACCGCGCTTG GCAAACTCCA GGAACAAAAT ATCGATAGCC TGCGCAGCGA CCTGCGCGAA
AAAGGCATCC CGTATACCAC CGTTCGTAAA GAAAATAACT ACGGCCTGAG CATCACTTTC
CGCGATGCTA AAGCTCGTGA TGAAGCCATT GCGTATCTGA GCAAGCGTCA TCCGGACCTG
GTGATTAGCA GTCAGGGCAG CAACCAGCTG CGTGCGGTAA TGAGCGATGC TCGTCTGAGT
GAAGCGCGTG AATATGCGGT GCAGCAGAAC ATCAATATCC TGCGTAACCG TGTAAACCAA
CTTGGCGTGG CGGAGCCGGT GGTTCAGCGT CAGGGTGCTG ACCGTATCGT TGTTGAACTG
CCAGGTATTC AGGACACTGC GCGTGCGAAA GAGATTCTGG GTGCGACGGC AACGCTGGAA
TTCCGTCTGG TAAACACCAA CGTTGATCAG GCCGCTGCGG CATCCGGTCG CGTACCGGGC
GACTCTGAAG TGAAACAGAC CCGCGAAGGT CAGCCGGTTG TGCTGTACAA ACGCGTAATT
CTTACCGGTG ACCATATCAC CGACTCCACT TCCAGCCAGG ACGAATACAA CCAGCCGCAG
GTTAACATCT CGCTCGATAG CGCTGGTGGC AACATTATGT CTAACTTCAC CAAGGACAAC
ATCGGCAAAC CGATGGCAAC CCTGTTTGTG GAGTACAAAG ACAGCGGTAA GAAAGATGCA
AATGGTCGTG CGGTTCTGGT GAAACAGGAA GAGGTGATTA ACATCGCCAA CATCCAGTCT
CGTCTGGGTA ACAGCTTCCG TATCACCGGC ATCAACAACC CGAACGAAGC CCGTCAGCTG
TCACTGCTGC TGCGTGCCGG TGCGTTGATC GCGCCGATTC AGATTGTTGA AGAACGTACA
ATTGGCCCGA CCCTGGGTAT GCAGAACATT GAGCAGGGGC TGGAGGCTTG CCTTGCCGGT
CTGCTGGTTT CTATTCTGTT CATGATCATC TTCTATAAGA AGTTTGGTCT GATTGCGACC
AGTGCTCTGA TTGCCAACTT GATCTTGATC GTCGGTATTA TGTCGCTGTT GCCAGGCGCA
ACACTGAGTA TGCCAGGTAT CGCGGGTATC GTCTTAACCC TTGCGGTAGC GGTCGATGCG
AACGTACTGA TCAACGAACG TATTAAAGAA GAGTTGAGCA ACGGACGTAC TGTTCAACAG
GCAATTGATG AAGGTTATCG TGGCGCATTC AGTTCTATCT TCGATGCGAA CATCACCACG
CTGATTAAAG TCATCATCCT GTACGCAGTG GGTACCGGGG CAATTAAAGG GTTCGCGATT
ACTACCGGTA TCGGTGTGGC GACGTCGATG TTTACCGCGA TTGTCGGTAC GCGTGCCATC
GTAAACCTGC TATATGGCGG CAAGCGCGTC AAGAAGCTGT CAATCTGA
 
Protein sequence
MLNRYPLWKY VMLIVVIVIG LLYALPNLFG EDPAVQITGA RGVAASEQTL IQVQKTLQEE 
KITAKSVALE EGAILARFDS TDTQLRAREA LMGVMGDKYV VALNLAPATP RWLAAIHAEP
MKLGLDLRGG VHFLMEVDMD TALGKLQEQN IDSLRSDLRE KGIPYTTVRK ENNYGLSITF
RDAKARDEAI AYLSKRHPDL VISSQGSNQL RAVMSDARLS EAREYAVQQN INILRNRVNQ
LGVAEPVVQR QGADRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ AAAASGRVPG
DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG NIMSNFTKDN
IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS RLGNSFRITG INNPNEARQL
SLLLRAGALI APIQIVEERT IGPTLGMQNI EQGLEACLAG LLVSILFMII FYKKFGLIAT
SALIANLILI VGIMSLLPGA TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ
AIDEGYRGAF SSIFDANITT LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIVGTRAI
VNLLYGGKRV KKLSI