| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_0196 |
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| Symbol | ldcC1 |
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| ID | 6969972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 213003 |
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| End bp | 215144 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643384271 |
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| Product | lysine decarboxylase, constitutive |
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| Protein accession | YP_002268794 |
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| Protein GI | 209400786 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCA TTGCCATTAT GGGACCGCAT GGCGTCTTTT ATAAAGATGA GCCCATCAAA
GAACTGGAGT CGGCGCTGGT GGCGCAAGGC TTTCAGATTA TCTGGCCACA AAACAGCGTT
GATTTGCTGA AATTTATCGA ACATAACCCT CGAATTTGCG GCGTGATTTT TGACTGGGAT
GAATACAGTC TCGATTTATG TAGCGATATC AATCAGCTTA ATGAATATCT CCCGCTTTAT
GCCTTCATCA ACACCCACTC GACGATGGAT GTCAGCGTGC AGGATATGCG GATGGCGCTC
TGTTTTTTTG AATATGCGCT GGGGCAGGCG GAAGATATCG CCATTCGTAT GCGTCAGTAC
ACCGACGAAT ATCTTGATAA CATTACCCCA CCGTTCACGA AAGCCTTGTT TACCTACGTC
AAAGAGCGGA AGTACACCTT TTGTACGCCG GGTCATATGG GCGGCACCGC ATATCAAAAA
AGCCCGGTTG GCTGTCTGTT TTATGACTTT TTCGGCGGGA ATACCCTTAA GGCTGATGTC
TCTATTTCGG TCACCGAGCT TGGTTCGTTG CTCGACCACA CCGGGCCACA CCTGGAAGCG
GAAGAGTACA TCGCGCGGAC TTTCGGCGCG GAACAGAGTT ATATCGTTAC CAACGGAACA
TCGACGTCGA ACAAAATTGT GGGTATGTAC GCCGCGCCAT CCGGCAGTAC GCTGTTGATT
GACCGCAATT GTCATAAATC GCTGGCGCAT CTGTTGATGA TGAACGATGT AGTGCCAGTC
TGGCTGAAAC CGACGCGTAA TGCGTTGGGG ATTCTGGGTG GGATCCCGCG CCGTGAATTT
ACTCGCGACA GCATCGAAGA GAAAGTCGCT GCCACCACGC AGGCACAATG GCCGGTTCAT
GCGGTGATTA CCAACTCAAC CTATGATGGC TTGCTCTACA ACACCGACTG GATCAAACAG
ACGCTGGATG TCCCGTCGAT CCACTTCGAT TCCGCCTGGG TGCCGTACAC CCATTTTCAT
CCGATCTACC AGGGGAAAAG TGGTATGAGC GGCGAGCGTG TTGCGGGAAA AGTGATCTTC
GAAACGCAAT CGACCCACAA AATGCTGGCG GCGTTATCGC AGGCTTCGCT GATCCACATT
AAAGGTGAGT ATGACGAAGA GGCGTTTAAC GAAGCCTTTA TGATGCATAC CACCACCTCG
CCCAGTTATC CCATTGTTGC TTCGGTTGAG ACGGCAGCAG CGATGCTGCG TGGTAATCCG
GGCAAACGGC TGATTAACCG TTCAGTAGAA CGAGCTCTGC ATTTTCGCAA AGAGGTCCAG
CGGCTGCGGG AAGAGTCTGA CGGTTGGTTT TTCGATATCT GGCAACCGCC GCAGGTGGAT
GAAGCCGAAT GCTGGCCCGT TGCGCCTGGC GAACAATGGC ACGGCTTTAA CGATGCGGAT
GCCGATCATA TGTTCCTCGA TCCGGTTAAA GTCACTATTC TGACGCCGGG GATGGACGAG
CAGGGCAATA TGAGCGAGGA GGGGATCCCG GCGGCGCTGG TGGCGAAGTT CCTCGATGAG
CGTGGGATCG TGGTAGAGAA AACCGGCCCA TATAACCTGC TGTTTCTCTT TAGTATTGGC
ATCGATAAAA CCAAAGCAAT GGGATTATTG CGTGGGTTGA CGGAATTTAA ACGCTCTTAC
GATCTCAATC TGCGAATCAA AAATATGCTT CCGGATCTGT ACGCAGAAGA TCCCGATTTC
TACCGCAATA TGCGTATTCA GGATCTGGCG CAAGGGATCC ATAAGCTGAT TCGTAAACAC
GATCTTCCCG GTTTGATGTT GCGGGCATTC GATACTTTGC CGGAGATGAT CATGACGCCA
CATCAGGCAT GGCAGAGACA GATTAAAGGT GAAGTAGAAA CCATTGCGCT GGAACAACTG
GTCGGTAGAG TATCGGCAAA TATGATCCTG CCTTATCCAC CGGGCGTACC GCTGTTGATG
CCTGGAGAAA TGCTGACCAA AGAGAGCCGC ACAGTACTCG ATTTTCTACT GATGCTTTGT
TCCGTAGGGC AACATTACCC CGGTTTTGAA ACGGATATTC ACGGTGCGAA ACAGGACGAA
GACGGCGTTT ACCGCGTACG AGTCCTAAAA ATGGCGGGAT AA
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| Protein sequence | MNIIAIMGPH GVFYKDEPIK ELESALVAQG FQIIWPQNSV DLLKFIEHNP RICGVIFDWD
EYSLDLCSDI NQLNEYLPLY AFINTHSTMD VSVQDMRMAL CFFEYALGQA EDIAIRMRQY
TDEYLDNITP PFTKALFTYV KERKYTFCTP GHMGGTAYQK SPVGCLFYDF FGGNTLKADV
SISVTELGSL LDHTGPHLEA EEYIARTFGA EQSYIVTNGT STSNKIVGMY AAPSGSTLLI
DRNCHKSLAH LLMMNDVVPV WLKPTRNALG ILGGIPRREF TRDSIEEKVA ATTQAQWPVH
AVITNSTYDG LLYNTDWIKQ TLDVPSIHFD SAWVPYTHFH PIYQGKSGMS GERVAGKVIF
ETQSTHKMLA ALSQASLIHI KGEYDEEAFN EAFMMHTTTS PSYPIVASVE TAAAMLRGNP
GKRLINRSVE RALHFRKEVQ RLREESDGWF FDIWQPPQVD EAECWPVAPG EQWHGFNDAD
ADHMFLDPVK VTILTPGMDE QGNMSEEGIP AALVAKFLDE RGIVVEKTGP YNLLFLFSIG
IDKTKAMGLL RGLTEFKRSY DLNLRIKNML PDLYAEDPDF YRNMRIQDLA QGIHKLIRKH
DLPGLMLRAF DTLPEMIMTP HQAWQRQIKG EVETIALEQL VGRVSANMIL PYPPGVPLLM
PGEMLTKESR TVLDFLLMLC SVGQHYPGFE TDIHGAKQDE DGVYRVRVLK MAG
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