Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_0174 |
Symbol | dapD |
ID | 6972191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 188590 |
End bp | 189414 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 643384250 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_002268773 |
Protein GI | 209400200 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.569241 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCAGT TACAGAACAT TATTGAAACC GCTTTTGAAC GCCGTGCCGA GATCACGCCA GCCAATGCAG ACACCGTTAC CCGCGAAGCG GTAAATCAGG TGATCGCCCT GCTGGATTCC GGCGCACTGC GTGTAGCGGA AAAAATTGAC GGTCAGTGGG TGACGCATCA GTGGTTGAAA AAAGCGGTGC TGCTCTCTTT CCGTATTAAT GATAATCAGG TGATCGAAGG GGCAGAAAGC CGCTACTTCG ACAAAGTGCC GATGAAATTC GCCGACTACG ACGAAGCACG TTTCCAGAAA GAAGGCTTCC GCGTTGTACC ACCTGCGGCG GTACGTCAGG GTGCGTTTAT TGCCCGTAAC ACCGTGCTGA TGCCGTCTTA CGTCAACATC GGCGCATATG TTGATGAAGG CACCATGGTC GATACCTGGG CGACCGTCGG TTCTTGTGCG CAGATTGGTA AAAACGTCCA CCTTTCCGGT GGCGTGGGCA TCGGCGGTGT GCTGGAACCG CTGCAGGCTA ACCCAACCAT CATTGAAGAT AATTGCTTCA TCGGCGCGCG CTCTGAAGTA GTTGAAGGGG TGATTGTCGA AGAAGGTTCC GTCATTTCCA TGGGCGTATA CATTGGTCAG AGCACCCGTA TTTACGACCG TGAAACCGGC GACATCCACT ACGGTCGCGT TCCGGCGGGG TCTGTGGTTG TTTCAGGTAA TCTGCCGTCG AAAGATGGCA AATACAGCCT CTACTGTGCG GTTATCGTTA AGAAAGTTGA CGCGAAAACT CGCGGCAAAG TCGGCATTAA CGAACTGCTG CGTACCATCG ACTAA
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Protein sequence | MQQLQNIIET AFERRAEITP ANADTVTREA VNQVIALLDS GALRVAEKID GQWVTHQWLK KAVLLSFRIN DNQVIEGAES RYFDKVPMKF ADYDEARFQK EGFRVVPPAA VRQGAFIARN TVLMPSYVNI GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIED NCFIGARSEV VEGVIVEEGS VISMGVYIGQ STRIYDRETG DIHYGRVPAG SVVVSGNLPS KDGKYSLYCA VIVKKVDAKT RGKVGINELL RTID
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