Gene ECH74115_0172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECH74115_0172 
SymbolcdaR 
ID6966792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli O157:H7 str. EC4115 
KingdomBacteria 
Replicon accessionNC_011353 
Strand
Start bp186643 
End bp187800 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content53% 
IMG OID643384248 
Productcarbohydrate diacid transcriptional activator CdaR 
Protein accessionYP_002268771 
Protein GI209396144 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3835] Sugar diacid utilization regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGGCT GGCATCTTGA TACCAAAATG GCGCAGGATA TCGTGGCACG TACCATGCGC 
ATCATCGATA CCAATATCAA CGTAATGGAT GCCCGTGGGC GAATTATCGG CAGCGGCGAT
CGTGAGCGTA TTGGTGAATT GCACGAAGGT GCATTGCTGG TACTTTCACA GGGACGAGTC
GTCGATATCG ATGACGCGGT GGCACGTCAT CTGCACGGTG TGCGGCAAGG GATTAATCTA
CCGTTACGGC TGGAAGGTGA AATTGTCGGC GTAATTGGCC TGACAGGTGA ACCAGAGAAT
CTGCGTAAAT ATGGCGAACT GGTCTGCATG ACGGCTGAAA TGATGCTGGA ACAGTCGCGG
TTGATGCACT TGTTGGCGCA GGATAGCCGT TTGCGGGAGG AACTGGTGAT GAACCTGATT
CAGGCAGAGG AGAATACTCC CGCACTTACT GAATGGGCGC AACGGCTGGG GATCGATCTC
AATCAACCGC GAGTGGTGGC TATTGTTGAG GTCGACAGCG GTCAGCTTGG TGTGGACAGC
GCAATGGCGG AGTTACAACA ACTGCAAAAC GCGCTGACTA CGCCCGAGCG TAATAATCTG
GTGGCGATTG TCTCGCTAAC CGAAATGGTG GTGTTGAAAC CGGCGTTGAA CTCTTTTGGG
CGCTGGGATG TAGAAGATCA TCGTAAGCGA GTTGAACAAC TGATTACCCG CATGAAAGAG
TACGGCCAGC TGCGTTTTCG CGTTTCACTG GGCAACTATT TTACCGGTCC TGGCAGTATT
GCCCGATCCT ATCGTACGGC GAAAACGACG ATGGTGGTGG GTAAACAGCG GATGCCAGAA
AGTCGCTGCT ATTTTTATCA GGATCTGATG TTACCTGTGT TACTCGACAG TTTGCGTGGC
GACTGGCAGG CCAACGAACT GGCGCGACCG CTGGCGCGGC TGAAAGCGAT GGACAATAAC
GGCTTGCTGC GACGAACGCT GGCGGCGTGG TTTCGTCACA ATGTGCAACC GCTGGCAACG
TCAAAGGCGT TGTTTATTCA TCGTAATACC CTGGAGTATC GGCTTAATCG TATATCGGAA
CTGACCGGGC TTGATTTGGG CAATTTTGAT GACAGGTTGC TGCTGTATGT GGCGTTACAA
CTGGATGAAG AGCGGTAG
 
Protein sequence
MAGWHLDTKM AQDIVARTMR IIDTNINVMD ARGRIIGSGD RERIGELHEG ALLVLSQGRV 
VDIDDAVARH LHGVRQGINL PLRLEGEIVG VIGLTGEPEN LRKYGELVCM TAEMMLEQSR
LMHLLAQDSR LREELVMNLI QAEENTPALT EWAQRLGIDL NQPRVVAIVE VDSGQLGVDS
AMAELQQLQN ALTTPERNNL VAIVSLTEMV VLKPALNSFG RWDVEDHRKR VEQLITRMKE
YGQLRFRVSL GNYFTGPGSI ARSYRTAKTT MVVGKQRMPE SRCYFYQDLM LPVLLDSLRG
DWQANELARP LARLKAMDNN GLLRRTLAAW FRHNVQPLAT SKALFIHRNT LEYRLNRISE
LTGLDLGNFD DRLLLYVALQ LDEER