| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_0120 |
|---|
| Symbol | pdhR |
|---|
| ID | 6968042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 126562 |
|---|
| End bp | 127326 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643384196 |
|---|
| Product | transcriptional regulator PdhR |
|---|
| Protein accession | YP_002268719 |
|---|
| Protein GI | 209400019 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0135155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTACA GCAAAATCCG CCAACCAAAA CTCTCCGATG TGATTGAGCA GCAACTGGAG
TTTTTGATCC TCGAAGGCAC TCTCCGCCCG GGCGAAAAAC TCCCACCGGA ACGCGAACTG
GCAAAACAGT TTGACGTCTC CCGTCCCTCA TTGCGTGAGG CGATTCAACG TCTCGAAGCG
AAGGGCTTGT TGCTTCGTCG CCAGGGTGGC GGCACTTTTG TCCAGAGCAG CCTATGGCAA
AGCTTCAGCG ATCCGCTGGT GGAGCTGCTC TCCGACCATC CTGAATCACA GTATGACTTG
CTCGAAACAC GACACGCCCT GGAAGGTATC GCCGCTTATT ACGCCGCGCT GCGTAGTACC
GATGAAGACA AGGAACGCAT CCGTGAACTC CACCACGCCA TAGAACTGGC GCAGCAGTCT
GGCGATCTGG ACGCGGAATC AAACGCCGTA CTCCAGTATC AGATTGCCGT CACCGAAGCG
GCCCACAATG TGGTTCTGCT TCATCTGCTA AGGTGTATGG AGCCGATGTT GGCCCAGAAT
GTCCGCCAGA ACTTCGAATT GCTCTATTCG CGTCGCGAGA TGCTGCCGCT GGTGAGTAGT
CACCGCACCC GCATATTTGA AGCGATTATG GCCGGTAAGC CGGAAGAAGC GCGCGAAGCA
TCGCATCGCC ATCTGGCCTT TATCGAAGAA ATTTTGCTCG ACAGAAGCCG TGAAGAAAGC
CGCCGTGAGC GTTCTCTGCG TCGTCTGGAG CAACGAAAGA ATTAG
|
|---|
| Protein sequence | MAYSKIRQPK LSDVIEQQLE FLILEGTLRP GEKLPPEREL AKQFDVSRPS LREAIQRLEA
KGLLLRRQGG GTFVQSSLWQ SFSDPLVELL SDHPESQYDL LETRHALEGI AAYYAALRST
DEDKERIREL HHAIELAQQS GDLDAESNAV LQYQIAVTEA AHNVVLLHLL RCMEPMLAQN
VRQNFELLYS RREMLPLVSS HRTRIFEAIM AGKPEEAREA SHRHLAFIEE ILLDRSREES
RRERSLRRLE QRKN
|
|---|
| |