| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_0116 |
|---|
| Symbol | ampD |
|---|
| ID | 6969310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 123203 |
|---|
| End bp | 123754 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643384193 |
|---|
| Product | N-acetyl-anhydromuranmyl-L-alanine amidase |
|---|
| Protein accession | YP_002268716 |
|---|
| Protein GI | 209396354 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3023] Negative regulator of beta-lactamase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00925583 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTAG AACAGGGGTG GCTGGTTGGC GCGCGCCGCG TTCCCTCACC ACATTACGAT
TGCCGCCCGG ATGACGAAAC ACCCACCCTG CTGGTGGTGC ACAATATTAG CCTGCCGCCA
GGCGAGTTTG GCGGTCCGTG GATCGACGCA TTATTCACTG GAACTATTGA TCCGCAGGCA
CATCCTTTCT TTGCTGAGAT CGCCCATTTG CGCGTCTCCG CTCACTGTTT GATTCGCCGT
GATGGTGAAA TAGTCCAGTA TGTTCCTTTC GATAAACGTG CATGGCATGC GGGAGTCTCT
CAGTATCAGG GGCGCGAACG CTGCAATGAT TTTTCTATTG GGATTGAGCT TGAAGGCACC
GATACGCTGG CGTATACCGA TGCGCAGTAT CAACAGCTTG CGGCGGTTAC GCGGGCACTG
ATTGATTGCT ATCCGGATAT CGCTAATAAC ATGACGGGCC ATTGTGATAT TGCGCCGGAT
CGGAAAACCG ATCCCGGTCC TGCATTTGAT TGGGCACGGT TTCGTGCGCT GGTCAGCAAG
GAGACAACAT GA
|
|---|
| Protein sequence | MLLEQGWLVG ARRVPSPHYD CRPDDETPTL LVVHNISLPP GEFGGPWIDA LFTGTIDPQA
HPFFAEIAHL RVSAHCLIRR DGEIVQYVPF DKRAWHAGVS QYQGRERCND FSIGIELEGT
DTLAYTDAQY QQLAAVTRAL IDCYPDIANN MTGHCDIAPD RKTDPGPAFD WARFRALVSK
ETT
|
|---|
| |