| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_A0022 |
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| Symbol | topB |
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| ID | 6966544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011351 |
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| Strand | + |
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| Start bp | 16875 |
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| End bp | 19031 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 643384053 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_002268532 |
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| Protein GI | 209395643 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.270283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.995092 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACTTT TTATTGCAGA AAAACCCGCA GTAGCGAATG ATATTGTTAA GGCACTTGGT
GGCAATTTTA CTCGACATGA TGGCTGGTTC GAAAGTGATA ACGCAATTGT GACTAACTGT
TTTGGTCATA TTATCGAATC ACAGCCACCG GAAAACTATA ATCCTGAATA TAAAGTCTGG
AAAGTTGAAA CGCTTCCTTT ACGTCTTTAT CCCGTGAAGT ATCAGCCTGT CGAAAGTGCC
GCAAAACAGG TTAAAACGAT TCTCGAACTT ATCAGCCGTG GAGACGTGAC TGAAATTGTT
CACGCTGGCG ATCCTGATGA TGAGGGACAG CTACTGGTTG ATGAAGTCCT GGAATATGCA
GGCAACACAA AACCCGTAAA GCGCGTTCTG ATTAACGACA ACACGCTTCC GGCAGTGAAA
AAGGCACTGG CAAATCTTAA AGACAATCGT GATTTCAAAG GACTTTACCT TAAGGCGCTG
GCGCGTTCAG TTGCCGATGC CGTCTATGGC TTCTCTATGA CACGTGCGTA CACCATTCCG
GCAAAAGCCA GAGGATATCA GGGCGTTCTG TCTGTCGGGC GCGTCCAGAC TCCCGTTCTT
GGCCTCATTG TGAATCGTAC CCGTGCTAAC CAGAACCATA AATCCAGTTT TTACTACACC
ATGACCGGAG TCTTTCAGCG TGGTGCTGAT GTTCTCAGTG CAAACTGGAA ACCAGGGGAA
TTTGCTCCGC TGACAGATCG TAAATTGCTT GATAAGGCAT GGGCAAACGG AACGGCGGCA
TCTCTTGCGG GAAAACCAGC CACCGTTGAA GCGGCAGCAA CTGATGATAA AAAAACTGCC
GCACCGTTGC CATTTAACCT GGTCAGGCTC CAGCAATACA TGAACAAAAA GTTCAAAATG
ACAGCGCAAA AAACGCTGGA TGTTACGCAA CAACTACGCG AAAAATACAA AGCGATCACT
TATAACCGCT CTGATTGCTC ATATCTTTCT GATGAACAAT TCAGCGAAGC GCCACAGGTT
ATCGATGCCC TGAAATCAGT ATTTCCTCAG TCGTTGGATA TTGATTCCGC ACGTAAAAGC
AAGGCGTTTA ACAGTGCAAA GGTGACTGCG CATACTGCGA TAATCCCGAC AGCCAGTGTG
CCTGATGTTA ACGCACTCAG CACCGACGAG CGCAATGTTT ACCTTGCGAT CGCACAACAC
TATCTTGTTC AGTTCATGCC TGAAAAAGCA TACCAGGAAG TATCGGTTGC CATTCAGTGT
GGTGATGAGT CGTTCTATGC TCGTGCCAGA AAAACAACTG ACAGCGGATT TGAGGCATTT
CTTGGTGCGG AAACCACAGA TGAAGGTGAA TCAGAAGATA ACGATGATTC CGCTTTTGAA
CTGCTCTGTA AAATTCGCAC AGGAGAAACA CTGACGACAA AAGAAGTTGT AGTTAATGAG
AAGAAAACGA CACCGCCGCC ATTATTTACA GAAGCCTCCT TGCTTGCTGC GCTTGTTCGT
GTCGCGGATT TTGTCACTGA CCCAACGATT AAAAAATTGT TGAAGGATAA AGATAAAGAC
AAAAAAGATG AACATGGCGG CATTGGTACG CCAGCTACCC GCGCAGCGAT TCTGGAAACG
TTGAAGAAGA GAAATTATAT CACGCTGGAA AAAGGAAAAC TCATTCCGAC AGATACCGGA
TATGCGCTTA TTGATGCTCT GCCGGATATA GCTGTTAATC CAGATATGAC AGCATTATGG
GCTGAAAAGC AGGCAGCTAT TGAAAATGGT GATCTGACGG TTGAACAGTT TATTAATGAG
CTGTACGGTG AACTGACAGG CATGATTTCT GATGTTGACC TGGGCGCGAT GAAGATTGAA
GCAGCAGCGC CAGCAGCCCA ATCTCAACGC CTGAATGCTC CCTGTCCCTC CTGTGGTAAG
CAGATTGCTA TCAGGCCAAA AGGTTATTTC TGTACAGGAT GTGAATTTAA AATCTGGAAG
AACTTCTCTG GCAAGGTTCT TTCTGATAAG CAAGTAGAAT CCTTGCTGAC AAAAGGTATT
ACAGGGGAGC TAAAAGGGTT TGTTAGTTCC AGGACGAATA AAGAATTTTC GGCTAAAGTT
AAATTGATTG ATAAAACAAC CGGAAAGTTA GGGTTTGAAT TTCCCCCTAA AAAGTAA
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| Protein sequence | MRLFIAEKPA VANDIVKALG GNFTRHDGWF ESDNAIVTNC FGHIIESQPP ENYNPEYKVW
KVETLPLRLY PVKYQPVESA AKQVKTILEL ISRGDVTEIV HAGDPDDEGQ LLVDEVLEYA
GNTKPVKRVL INDNTLPAVK KALANLKDNR DFKGLYLKAL ARSVADAVYG FSMTRAYTIP
AKARGYQGVL SVGRVQTPVL GLIVNRTRAN QNHKSSFYYT MTGVFQRGAD VLSANWKPGE
FAPLTDRKLL DKAWANGTAA SLAGKPATVE AAATDDKKTA APLPFNLVRL QQYMNKKFKM
TAQKTLDVTQ QLREKYKAIT YNRSDCSYLS DEQFSEAPQV IDALKSVFPQ SLDIDSARKS
KAFNSAKVTA HTAIIPTASV PDVNALSTDE RNVYLAIAQH YLVQFMPEKA YQEVSVAIQC
GDESFYARAR KTTDSGFEAF LGAETTDEGE SEDNDDSAFE LLCKIRTGET LTTKEVVVNE
KKTTPPPLFT EASLLAALVR VADFVTDPTI KKLLKDKDKD KKDEHGGIGT PATRAAILET
LKKRNYITLE KGKLIPTDTG YALIDALPDI AVNPDMTALW AEKQAAIENG DLTVEQFINE
LYGELTGMIS DVDLGAMKIE AAAPAAQSQR LNAPCPSCGK QIAIRPKGYF CTGCEFKIWK
NFSGKVLSDK QVESLLTKGI TGELKGFVSS RTNKEFSAKV KLIDKTTGKL GFEFPPKK
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