| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_B0009 |
|---|
| Symbol | gspJ |
|---|
| ID | 6966449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011350 |
|---|
| Strand | + |
|---|
| Start bp | 88282 |
|---|
| End bp | 88881 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643384025 |
|---|
| Product | general secretion pathway protein J |
|---|
| Protein accession | YP_002268504 |
|---|
| Protein GI | 209395566 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.264866 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAGC AACGGGTAAA AGGTTTTACG CTACTGGAAA TGCTGTTGGC ACTGGCTGTT
TTTGCAGCGT TGAGCATCAG CGCATTTCAG GTGCTGCAGG GTGGAATACG GGCGCACGAG
CTGTCCCGGG ATAAAGTACA GCGTCTGGCT GAGCTGCAGA GAGGGATCAG CCAGATGGAG
CGAGATCTTA CGCAGATGCT CCCAAGGCAC AGCCGGGGGA ATGAAGGCCT GCTGCTCGCT
GCACCTCATC TGCTAAAAAG TGATGACTGG GGGATTTCTT TTACGCGAAA CAGCTGGCTG
AATCCCGCCG GGATGCTGCC GCGCCCGGAG TTACAGTGGG TAGGTTATCG GTTGCGACAG
CAAAAGTTAG AACGCCTGAG CTACTTTCAT GTCGATCACC CTTCCGGTGT TTCTCCGGAT
GTCAGGGTGA TGCTGGACGG CGTTCACGCA TTTCGTCTGC GTTTTTTTGT TAACGGTGAT
TGGCAGGCGC GCTGGGACAG TACCGGCATC CTGCCGCAGG CTGTTGAAGT GACGCTGGTT
ATGGATGATT TTGCTGAACT GCCCCGTCTG TTTCTTGTGA GCAAGGAGAC CGCTGAATGA
|
|---|
| Protein sequence | MSQQRVKGFT LLEMLLALAV FAALSISAFQ VLQGGIRAHE LSRDKVQRLA ELQRGISQME
RDLTQMLPRH SRGNEGLLLA APHLLKSDDW GISFTRNSWL NPAGMLPRPE LQWVGYRLRQ
QKLERLSYFH VDHPSGVSPD VRVMLDGVHA FRLRFFVNGD WQARWDSTGI LPQAVEVTLV
MDDFAELPRL FLVSKETAE
|
|---|
| |