| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_B0007 |
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| Symbol | gspH |
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| ID | 6966423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011350 |
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| Strand | + |
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| Start bp | 87369 |
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| End bp | 87923 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643384023 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_002268502 |
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| Protein GI | 209395586 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.183951 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTCAGC GCGGTTTCAC AATACTGGAG ATGATGCTGA TCCTTTTGTT GATGGGCATC
ACTGCAGGGC TGGTACTAAT GTCATTTCCT GACTCTGCTC AGAATCATCT GCAACAACAG
CGGGAGCGTC TGCAGGCGCA GCTGGATTAT GCCTTGGATA GAAGCCAGCA GGACGGCTTG
CTGATGGGGA TTCAGGTTCG GTTTGACGGA TGGAAATTTA AGGTTCTGCA GCGCGGAACA
GCGGAAAGCC CCCCGACATT AGCTGAGGGA GGGGATATTT GGCAGGGGTA TGTCTGGCAA
ACTTGGCAAC CGCGACGTGC AGCCATGGGG GGCAAACTTC CGGATGATGT GCGTCTTGAG
CTGCAGTATC TCAGAGGTTT GCAGTGGATG TCTGAGCATG ATGACGGGGC TGAACCCGAT
ATTTTGCTGC TTCCCGGAGG TGAGGTAACG CCGTTCAGAC TTCTTTTCAG GCAGGTCGGA
GAGGAGGCCG TTGTCGGGCT GCAGGTTGAT GAGAACGGTT TGATGACTCT TTTTGAAGGT
GAGGTCTCAT TGTGA
|
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| Protein sequence | MSQRGFTILE MMLILLLMGI TAGLVLMSFP DSAQNHLQQQ RERLQAQLDY ALDRSQQDGL
LMGIQVRFDG WKFKVLQRGT AESPPTLAEG GDIWQGYVWQ TWQPRRAAMG GKLPDDVRLE
LQYLRGLQWM SEHDDGAEPD ILLLPGGEVT PFRLLFRQVG EEAVVGLQVD ENGLMTLFEG
EVSL
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