| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_B0003 |
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| Symbol | gspD |
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| ID | 6966391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011350 |
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| Strand | + |
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| Start bp | 82210 |
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| End bp | 84177 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643384019 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002268498 |
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| Protein GI | 209395621 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0438473 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTCAGGA AATGGTTGAA TGGGCGTTTG CCGGTACTTG TGTTCACTAC AGTAATTTTG
GGGGCCATTC CAGGGTGGGG GGCTGAATTT TCGGCCAACT TTAAAGATAC GGATATTCAG
GAGTTCATAA ATACTGTCAG TAAAAATTTA CACAAAACGG TAATAATTAA TCCTGACGTG
CAGGGAACCA TCACTGTACG CAGCTACGAT ATGCTGAACG AGGAACAATA TTATCAGTTC
TTTCTCAGTG TGCTGGACGT TTATGGTTTT GCTGTGGTCG ATATGCACAA CGGTATACTG
AAAGTAGTGC GCTCAAAAGA TGCCAAAACG TCGGCGGTGC CGGTAGCTAG TGATGTCAGT
CCCGGGACTG GTGATGAGGT TGTTACCCGG GTGGTCCCCG TAAGTAACGT GGCAGCCAGA
GATCTGGCGC CTTTGCTGCG TCAGCTCAAT GATAATGCTG GCGCAGGAAG CGTGGTGCAT
TATGAACCTT CTAATGTTTT GTTGATGACC GGACGTGCTG CAGTGATGAA ACGGTTGATG
GAGATTGTTG AACGTGTGGA TAAGGTGGGT AATCGCAGCG TTGCCACGGT CCCGCTCACC
TACGCGTCCG CAACAGACGT AGCCAGACTT GTTACGGAAC TGACTAAAGA AACAGATAAG
ACAGCTATAC CTGCTTGGAT GACGGCGAAA CTGGTTGCAG ACGAGAGGAC AAACTCAGTG
CTCGTCAGCG GAGAGCCAAT CTCCCAACAG CGTATCATCT CCATAATTAA GCAACTGGAT
CGTCAGGAGG ATGTTCAGGG TAATACTAAG GTGATTTACC TGAAATATGC GAAGGCGAAG
GATTTAGTGG AAGTCCTGAC AGGTATCAGC AGCAGTATTG AAAACGACTC TAAAAAGAGT
CCGTCAACGG AAGCCTTGCG CAAAGGAGTG ACGATTAAAT CCCACGAACA AACCAATGCC
CTGATCCTGA CGGGGGCCCC TGACGTCATC CGCGACCTTG AAAATGTGAT TTCGCAGTTG
GATATTCGTC GTCCTCAGGT CCTGGTGGAG GCCATCATTG CTGAAATACA GGATGCTGAC
GGGCTGAACC TTGGGATCCA GTGGGTGAAT AAACATGCCG GTGTGGCGCA GTTCACCAGT
ACCGGTTTAC CTATTACCAC GATGGTTCAG ACTCGTCAGA ACGAAATCTT AGACAGCGAT
CAGAGCAATG CCCTGAGCAT GTTTAACGGA ATTGCAGCGG GGTTTTATCA GGGAAACTGG
GCGATGCTGT TGACGGCGCT CTCCACAAGT AGCAAGAATG ATATCTTGGC GACCCCCAGT
ATTGTCACGC TGGACAATAT GGAGGCCACT TTCAATGTTG GTCAGGAGGT CCCGGTACTT
TCGGGCTCAC AGACAACCTC TGGGGACAAT ATTTTTAACA CGGTCGAGCG CAAAACGGTG
GGGATCAAAC TCAGGGTAAA ACCCCAGATC AACGAGGGTG ATTCCGTGTT ACTGGAGATA
GAACAGGAGG TGTCCGGTGT GGCGGACACT GCAGTAGCCA CCACTACTGA CTTGGGAGCA
ACCTTCAACA CCCGAACAGT GACCAATGCC ATGCTGGTCG GGAATGGCGA AACGGTGGTG
GTCGGAGGAT TACTGGATAA GTCGATCAGG GGGAGTGAGA GTAAAGTGCC ACTGCTGGGG
GATATCCCGG TACTGGGGCA TCTTTTTCGC GCAAAAAGCG AACAGACAGC TAAGCGTAAT
CTGATGCTGT TCATTCGGCC AACTATTATT CGTGAGCGCG ACGGATTTCG TCATGCTTCG
GCCGAAAAAT ACCAGTCGTT TAATCAGGAA CAGGTGCAGT CGCGTGGCAA AGAAACAACG
GCGCTGACGC TGAATGAGGA ACAGCTCAGG CTGTCCCCCG ATCAAGACGA TACGGCTTTC
CGGAAGGTGA AAGCGGCGAT TGCTGCGTTT TATGCGCAGG AGATGTAA
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| Protein sequence | MFRKWLNGRL PVLVFTTVIL GAIPGWGAEF SANFKDTDIQ EFINTVSKNL HKTVIINPDV
QGTITVRSYD MLNEEQYYQF FLSVLDVYGF AVVDMHNGIL KVVRSKDAKT SAVPVASDVS
PGTGDEVVTR VVPVSNVAAR DLAPLLRQLN DNAGAGSVVH YEPSNVLLMT GRAAVMKRLM
EIVERVDKVG NRSVATVPLT YASATDVARL VTELTKETDK TAIPAWMTAK LVADERTNSV
LVSGEPISQQ RIISIIKQLD RQEDVQGNTK VIYLKYAKAK DLVEVLTGIS SSIENDSKKS
PSTEALRKGV TIKSHEQTNA LILTGAPDVI RDLENVISQL DIRRPQVLVE AIIAEIQDAD
GLNLGIQWVN KHAGVAQFTS TGLPITTMVQ TRQNEILDSD QSNALSMFNG IAAGFYQGNW
AMLLTALSTS SKNDILATPS IVTLDNMEAT FNVGQEVPVL SGSQTTSGDN IFNTVERKTV
GIKLRVKPQI NEGDSVLLEI EQEVSGVADT AVATTTDLGA TFNTRTVTNA MLVGNGETVV
VGGLLDKSIR GSESKVPLLG DIPVLGHLFR AKSEQTAKRN LMLFIRPTII RERDGFRHAS
AEKYQSFNQE QVQSRGKETT ALTLNEEQLR LSPDQDDTAF RKVKAAIAAF YAQEM
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