| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_B0002 |
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| Symbol | gspC |
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| ID | 6966479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011350 |
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| Strand | + |
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| Start bp | 81334 |
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| End bp | 82209 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643384018 |
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| Product | general secretion pathway protein C |
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| Protein accession | YP_002268497 |
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| Protein GI | 209395545 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.856958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.237385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTGTTCT TTCTATCATT CCGGGGTGAC CGGGGCTTAT TTATAAAAGA TATCGTACTT
AAAATGCTGA CGCCAAACCG GCTATTGTGC GTAATTTTAC TTATTGCCGG ATATCAGCTG
GTGTCGGTTA TCCATCATTT CTGGCTGACT CAGGCAGCAT CGGTGCCCGG CTTATCCCGT
GTTAGCGCGC CGGAAACAGC GGTAACTGGT GATCAAACTG AAGAACGTTT TGTTTTTACG
TTATTCGGCA GGGCATCCCC ACTATCATCG GAGGGGAGAG CGCAGGAAAC AATGCCTTCC
CTGTCAGATG ATCTGCTTTC AGGGGAGGAT CTTGACGTGA GAGGTATACT TTATAGTTCG
GTTGCAGAGC ATTCCGTTGC CATATTTGCA CATAATAACA GACAGTTCAG TCTGAGCGTC
GGCGAAAAAG TACCCAGCTA CGATGCTACG ATTAGTGCTA TTTTTAGCGA TCATATTGTT
ATTAACTATC AGGGAAAAAC TGTATCACTG CCTCTGCGAT ATGATAATAC CGAAAAAAAG
AATGCATATG ACAATAATAA TTTAACAGTT GGAGACGTGA TAACCCAAGA TAATTTTCGG
GTAGAAAGTG TTTTTGATAT TATGAGCTTT TCAGCCGTTA CGGTTAATAA TACATTAAGC
GGTTATCGCT TGATTCCGGG TAAGCACAGT TCGTTATTTT ATAATGCTGG GTTGCATGAT
AACGATCTGG CCGTATCGGT TAATGGTTCA GAATTGCGTG ATACCAGACA GGCGCAGCAG
ATAATGAAGC AATTGCCAGA ACTTAAAGAA ATAAAAATAA CCGTCGAGCG TGATGGTCAG
TTATATGATG CATTTATTGC TGTAGGAGAA AACTGA
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| Protein sequence | MLFFLSFRGD RGLFIKDIVL KMLTPNRLLC VILLIAGYQL VSVIHHFWLT QAASVPGLSR
VSAPETAVTG DQTEERFVFT LFGRASPLSS EGRAQETMPS LSDDLLSGED LDVRGILYSS
VAEHSVAIFA HNNRQFSLSV GEKVPSYDAT ISAIFSDHIV INYQGKTVSL PLRYDNTEKK
NAYDNNNLTV GDVITQDNFR VESVFDIMSF SAVTVNNTLS GYRLIPGKHS SLFYNAGLHD
NDLAVSVNGS ELRDTRQAQQ IMKQLPELKE IKITVERDGQ LYDAFIAVGE N
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