| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II1098 |
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| Symbol | |
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| ID | 6962405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 1194983 |
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| End bp | 1197106 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643382335 |
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| Product | ABC transporter ATP-binding protein |
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| Protein accession | YP_002265364 |
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| Protein GI | 209809825 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.89235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAGTA TGAAAGATTC CTTATTGCAT TCACTTTGTT ATGTAAGCAG TTACTACGGC
CAGTTGAATT CTCCAGAGGC TTTGATTAAT GGCCTTCCAT TACAAGATGG CAAATTAACA
CCGATGTTAT TTTCTCGTGC TGCTGAAAAG GCAGGGTTAA TAGCAAAAGA AAATCGAACT
GAATTACGTC ATATTCCCTC ATTGATATTA CCTGTGGTTT TATTATTAAA AGAGGGTGAA
TCTTGTGTAT TAATTGGGTT TGATGCTGAT AAGAAAGAAG CTGAAATCAT AGTTTCAAGT
TCAGATATGC TTCCTATTTC AATTTCTGTT GAAGATTTAG AATCTCAATA TACTGGACGG
TATTTCTTAT TGAAAAAGAA ATTTCGTTAT GATGATCGTT CCCCAGAAAT TTTAAAGAAG
CGAGAAGGAC ATTGGTTTTG GAGTACCTTA TTTGAATCGA AGCATATTTA TCGAGATGTG
TTTCTTGCTT CTATATTGAT TAATATTTTT GCGATAGCAA CACCTATGTT TACTCGGCTG
GTGTACGATA AAGTAGTTCC TAACCTTGCT TTTGAATCTC TATGGGTTTT GGCTTCTGGT
ATTTTTATTG TCTTTGTTTT TGATTTCGTA CTGAAATACT TACGTGGTTA TTTCATTGAT
GTTGCAGGTA AAAAATCAGA TGTGTTAATT TCATCGAAAT TATTTCAAAA AGTTCTTGGA
ATTAGAATGG AGGCGAAGCC ACCTTCTGTT GGTGCATTTG CTCGACATTT GCAAGAGTTT
GAGTCTATTC GAGAGTTTTT TACATCAGCA ACGATAGCGT CATTAATTGA TTTACCTTTT
GCTCTATTGT TCTTATTTAT TATATATCTG ATTGCGGGAC CGATTGTTTT AGTTCCTATT
GTCGGGATTG TATTATTGTT AATCCATGCG GCCATCATTC AGGGCCCTCT AAAGAAAACG
ATTGAAGAAG GTTCTCGATT GTCTTCTCAG AAGTACGCAA ATCTTATTGA AAGTTTGGTT
GGATTAGAGA CGTTAAAATT ATTTAATGCT CAAAGCCAAT TTCAATATCG CTGGGAAGAA
GCGGTAACGC ATATTTCTAA TTGGAGCATT AAAAGCCGTC GTATTACGGA TTCTATTCAA
AATATGGCGG GGTTTGTTCA GCAAGCGGTG AACATTGGAA TGATTATTGT TGGTGTTTAT
TTAATTGCTA ATGGTGATTT AACCATGGGA GCATTGATTG CTTCTACCAT GTTAAGTGGT
AAGGCGATTG GTCCTTTGGT GCAGATATCT TTGCTATCTA CACGTTATAA CCAAGCTAAG
TCTTCGATGA CTATCATTGA GCAATTAATG GCAATGCCTG ATGAGCAAGA AGAAGGTAAG
CGTTATATTC ATCGACCGGT TCTTCAAGGC AAAATTGAAT TAGATAAAGT GACATTTAAC
TACCCTGAAG CTCAAATGTC TGCCGTTCGT GATATTAGCT TGACGATTAA CCCTGGTGAA
AAAGTAGCGA TCATTGGTCG GATTGGTTCA GGTAAAACAA CATTAGAACG TCTCATTATG
GGGCTCTATC AAGCTACTGA GGGCTCTGTA CGAATTGATG ATACCGATAT CTCCCAATTG
CATCATGTCG ACGTACGACG CAATATAGGC TGTGTACCGC AAGATATTAC TTTATTTTAT
GGTTCTATCC GAGAAAATAT TATGCTTGGC CGAGAGTTAT CTGATGACAG TGAAGTGATG
GAAGCGGCAA ACCGTGCAGG GGTAACCGCT TTTACACAGC AAGATCCTGC TGGATTAGAG
AGACAAGTTG GGGAAGGGGG CTTATTACTT TCTGGTGGTC AGCGTCAATC TGTTGCGATA
GCGAGAGCAT TAATTGGTAG GCCTCCTGTA TTGCTTTTAG ATGAGCCAAC AAGCAGCATG
GATAATCGTT CTGAGTTATT GTTTAAGAAT CAATTATCTC ATTTGAAACC GTCAGAGACC
TTAATTTTAA TTACGCATAA AACATCAATG CTTGATGTGG TTGATAGGGT CATTGTTATG
GAAAAAGGTC ATATCATTGC TGATGGACCA AAAGCAACGG TATTAAATGA ATTAAAGACG
GGTAAAGTCA GAGCCGTGAG TTAG
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| Protein sequence | MSSMKDSLLH SLCYVSSYYG QLNSPEALIN GLPLQDGKLT PMLFSRAAEK AGLIAKENRT
ELRHIPSLIL PVVLLLKEGE SCVLIGFDAD KKEAEIIVSS SDMLPISISV EDLESQYTGR
YFLLKKKFRY DDRSPEILKK REGHWFWSTL FESKHIYRDV FLASILINIF AIATPMFTRL
VYDKVVPNLA FESLWVLASG IFIVFVFDFV LKYLRGYFID VAGKKSDVLI SSKLFQKVLG
IRMEAKPPSV GAFARHLQEF ESIREFFTSA TIASLIDLPF ALLFLFIIYL IAGPIVLVPI
VGIVLLLIHA AIIQGPLKKT IEEGSRLSSQ KYANLIESLV GLETLKLFNA QSQFQYRWEE
AVTHISNWSI KSRRITDSIQ NMAGFVQQAV NIGMIIVGVY LIANGDLTMG ALIASTMLSG
KAIGPLVQIS LLSTRYNQAK SSMTIIEQLM AMPDEQEEGK RYIHRPVLQG KIELDKVTFN
YPEAQMSAVR DISLTINPGE KVAIIGRIGS GKTTLERLIM GLYQATEGSV RIDDTDISQL
HHVDVRRNIG CVPQDITLFY GSIRENIMLG RELSDDSEVM EAANRAGVTA FTQQDPAGLE
RQVGEGGLLL SGGQRQSVAI ARALIGRPPV LLLDEPTSSM DNRSELLFKN QLSHLKPSET
LILITHKTSM LDVVDRVIVM EKGHIIADGP KATVLNELKT GKVRAVS
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