| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II1071 |
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| Symbol | |
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| ID | 6962380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 1166647 |
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| End bp | 1168224 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 643382312 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002265343 |
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| Protein GI | 209809804 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTAA ATAAGCCTAA TACCTTCTTT TTTTGGCCAC GTTTTATCGT GTTATTCTTT
TCTTTGTTAT TTTCTGTTTT CTATTTTTAC AAGTACTCAG AGAATGAAAT AAACGTTAAC
AAAATAAAAT CTGAACAGAA AGCAATTATT GCTGCGCAAA AGAAATACAT CTCAATGACT
CTTGATAGTA TCGGTCAAGA CCTCTTACTA TTGTCTGACT TTATTGAGAT TAATCATGCC
TATAATTCCC ATAATAAAAA ACTCATTGAG CTCACAGAAG CCAATGCACT TGCATTAAGT
TTACGTAAAG GTTTGTATGA CCAACTTCGT TATATTGATC TAAAAGGCAA TGAAATTATC
CGTGTTAATT ATAATGACGG AGATCCTTCT ATTGTTCCTA AAGCACAATT ACAAAATAAA
GCGAATCGTT ATTACGTGAA AGACAGTTTA AAGCTGCATG ATGGCGATGT TTACATCTCA
GCACTTGATC TCAACATTGA GCACGGCGAG ATAGAAATCC CGCACAAGCC GATGCTCCGT
CTTGCCACGC CTGTTTATGA TGACAATGGT CAAAAACGTG GAATTGTTAT ACTCAACTAC
TTAGCAGAAC ACTTATTGGA TGGATTGAAA ATATTTAATT TGAACCAACA TGATCATCAT
ATGCTGATCA ATCATAACGA TTACTTCTTA TTCTATGACA GAAGACCAGA GTTAGAATTT
GCCTTCATGT TTCCTAATAA TGAAGAGAAA AAATACTCCG CTATTTACCC AGAAACATAC
CGTTGTTTAA ATCACAAAGC GTCAGGCCAA GTTGATATCA GCTCTGGCGT GCTTACTTTT
GATTCGGTAT TCTCGTACCC AAAAAATATC GATTCATCTA ATTCAATTCA CATTGTTAAA
CAAGATACGT GTTGGCGTTT AATCACTTTT GTGCCGAATT CAACAAAATG GACCATTGCG
AATACCTCAT CGAATGATTT GCATATTTTA GGCAGTATGA TCCTATTCTC ATTGTGCATG
TCTTACATTA TCGCGCAGCT GCAACTTAAA AAACGCATCG ATCATAATGA AATACGAAAA
TTGGCACATC ACGACAGTTT GACTGGCTTA ATTAATCGCG GGTATTTTAA AAAATTATTC
CATTGGAAAA TGCAACACGC CCGACGATTT GAATCAAAGC TAGCGCTAAT CTATATTGAT
CTTGATGGCT TTAAAGATCT CAATGACAGC TTTGGTCATA GCGTTGGAGA TCTGGCATTA
AAAGCAATCT CTAAGAATTT AGAATATGCC TTCTCTATTA ATGCGTATGT TTCTCGTATT
GGTGGGGATG AATTTGCAGT CCTGATTTAT GATGTTAATG ACACACAAGA AGTCATTGCA
CAGGTTGAAG CGTATTTGTA TTTATCCCAT CAACCACTCA CCCTTGATGA TAAACAATAC
ATGCTCAACA CCAGTATTGG CGTTGCCTTC TTCCCTGAAC ACGGCACAAA CATCAATGCT
CTAATGCATA ACGCCGATGA AGCAATGTAT TACATCAAAC GTTCAGGAAA AAATGGATTC
CAAATTTTTA GTCTTTAA
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| Protein sequence | MELNKPNTFF FWPRFIVLFF SLLFSVFYFY KYSENEINVN KIKSEQKAII AAQKKYISMT
LDSIGQDLLL LSDFIEINHA YNSHNKKLIE LTEANALALS LRKGLYDQLR YIDLKGNEII
RVNYNDGDPS IVPKAQLQNK ANRYYVKDSL KLHDGDVYIS ALDLNIEHGE IEIPHKPMLR
LATPVYDDNG QKRGIVILNY LAEHLLDGLK IFNLNQHDHH MLINHNDYFL FYDRRPELEF
AFMFPNNEEK KYSAIYPETY RCLNHKASGQ VDISSGVLTF DSVFSYPKNI DSSNSIHIVK
QDTCWRLITF VPNSTKWTIA NTSSNDLHIL GSMILFSLCM SYIIAQLQLK KRIDHNEIRK
LAHHDSLTGL INRGYFKKLF HWKMQHARRF ESKLALIYID LDGFKDLNDS FGHSVGDLAL
KAISKNLEYA FSINAYVSRI GGDEFAVLIY DVNDTQEVIA QVEAYLYLSH QPLTLDDKQY
MLNTSIGVAF FPEHGTNINA LMHNADEAMY YIKRSGKNGF QIFSL
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