Gene VSAL_II0948 details

Gene Information

• Locus tag: VSAL_II0948
• ID: 6962270
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: +
• Start bp: 1036919
• End bp: 1037629
• Gene Length: 711 bp
• Protein Length: 236 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643382207
• Product: ABC transporter ATP-binding protein
• Protein accession: YP_002265238
• Protein GI: 209809699
• COG category: [V] Defense mechanisms
• COG ID: [COG1131] ABC-type multidrug transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0386594
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTTCTC TTGTTCATGT AAAGCACGTA TCTAAACAAT ATTCTGACTC AAGTCAGCAA 
GCGATTAATG ACATCAGCTT TGATCTTAAT GCAGGGCAAG TCTTAGGCTT ACTCGGCCAC 
AATGGGGCAG GAAAATCGAC ACTGATTAAT GCCTTGCTCG GCGCACACCG CTATCAAGGT 
GATATTCGCA TTAATGGGTT ACACCCCATC GACCAACATG CTGAGTTAAT GCAACATCTT 
GCCTATATTT CAGATGTAAA TGTCTTACCT GAATGGATGA GCGTAAAGCA ATTATTAAAA 
TACACCTCTG GTATTCACCC AAGTTTTGAT ATTGATAAAG CCACCGCCGT CTTAGCAAAC 
ACCGACATCC AATTAAAAAG CACCATTAAA AGTCTATCTA AAGGCATGAA AGTACAAGTT 
CATTTAGCCA TCGTGATAGC AACAAACACA AAAGTACTTA TTTTAGATGA ACCAACATTA 
GGCTTGGATT TATTATACCG AGATACCTTT TATCAACATT TAACGTCTTG GTTTAACGCC 
GGTGAACGCT GTCTGATTAT TGCCAGTCAT GAAGTGTCTG AAATTGAGCA CCTATTAACG 
GATGTTCTAA TATTAAAGCA AGGCCGAATC GTGAAACAAG AAAACATGAA TAACATTCCA 
CAAGGCACGT TAGCCGAACT CTTTATCACG CTTCAAAAGG AGTCAATCTA A 

 

Protein sequence

MTSLVHVKHV SKQYSDSSQQ AINDISFDLN AGQVLGLLGH NGAGKSTLIN ALLGAHRYQG 
DIRINGLHPI DQHAELMQHL AYISDVNVLP EWMSVKQLLK YTSGIHPSFD IDKATAVLAN 
TDIQLKSTIK SLSKGMKVQV HLAIVIATNT KVLILDEPTL GLDLLYRDTF YQHLTSWFNA 
GERCLIIASH EVSEIEHLLT DVLILKQGRI VKQENMNNIP QGTLAELFIT LQKESI