| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0942 |
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| Symbol | |
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| ID | 6962265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 1028698 |
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| End bp | 1029921 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643382203 |
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| Product | putative secretion protein, HlyD family |
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| Protein accession | YP_002265234 |
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| Protein GI | 209809695 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.926977 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGAGG GATTAGCCGT ATGGGCACTG TTTATTTATT TGCTTCGAAT GATAGGTATG
CCTTGGAATA AATTCACACA AGGTTTTGCT TACATTGGCG GCGGATCTTG GTTGTTGTTT
GTATGGGCTG GTTTATTAAA CTATACGCCA ATGGATTTAT CTGGTGGTTC CGTCGTCCAA
TCTCCTCACA TTCAATTACG ACCGGCAAGT ACCCAGATTA AAGGCACAGT CAAAACCATT
TATATCAAAC CAAATCAAGA AGTGAAGAAA GGTCAATTGG TGTATGAACT GGATGACGAG
CTTTATCAAA TCGCGCTTAA TAAGGCGAAT GTGTCACAAG AAGCCAGTGA AGTCGGTCTT
GATGTAGCCA AACAAAATGT AAAACTCGCA CACCAAGCAA TTTCAGCATC TGAGAGTGAC
ATTGTCGTAA GTCAAAAACA AATCGAATCT AAAAACCAAG ATTTAAAATA CAAACAAATC
ACGCTAAAAC GCTACGTAGA CCAAAATCGT AAAGTAAAAA ATACGATTAC ACAAAGCGCA
TTAGATGAAC AAGGCACGTT AGTTTCTATC GGTGAAATCG ATGTTGCTAG TGCCGTTGCT
CAATTAGACA AAGCAAAATT AGCAAACGAA AAAGCGATTT TGGATTTAGA CAATGCAAAA
TTCGGTGTAA AAGCCAAAGA AAGTGAATTG GCTAATGCGA AAGAAAACGT CACTCAAGCA
CAATGGAATT TAGACAATAC GAAGATCTAC GCGCCTGCTG ATGGCTATGT GACCAACTTC
ATTCTTCGTG AAGGGCAATA TGTCGGTACT GTTCCTCGTA TGCAAATGTA CACAAATGAA
AAATATGTAT TGATGCGAGT TAACCACCAA GCTATTCGTA ATGTCAAAGT GGGTCGCCCT
GCTGAATTTT CAAGTGCGGT TTACCCTGGT AAAGTATTCA TCGCGGAAGT AGAAGGTATT
ATCGAAGCGA CAGGAGAAGC ACAAGCTAAT TTACTTGGTC GTGAAACCAA TGTTCGTCAA
ACCACAGGAT TAAACGTCAA TAACAAGCAC CATTTTGTTC GTTTGAAACT TGAAGAAGGC
GAAGGTTATG ATATTCCTGT TGGGTCGGTT GGCTTAGCGT GGATCTCTGG AGAAAAACCC
GTTGGCTTTA TGGCTTTCTT AGATGTTATT CGAGGTATTA TTATTCGAAT GAAATCACAA
ATTTACTTCT TCTATTCTTT GTAA
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| Protein sequence | MLEGLAVWAL FIYLLRMIGM PWNKFTQGFA YIGGGSWLLF VWAGLLNYTP MDLSGGSVVQ
SPHIQLRPAS TQIKGTVKTI YIKPNQEVKK GQLVYELDDE LYQIALNKAN VSQEASEVGL
DVAKQNVKLA HQAISASESD IVVSQKQIES KNQDLKYKQI TLKRYVDQNR KVKNTITQSA
LDEQGTLVSI GEIDVASAVA QLDKAKLANE KAILDLDNAK FGVKAKESEL ANAKENVTQA
QWNLDNTKIY APADGYVTNF ILREGQYVGT VPRMQMYTNE KYVLMRVNHQ AIRNVKVGRP
AEFSSAVYPG KVFIAEVEGI IEATGEAQAN LLGRETNVRQ TTGLNVNNKH HFVRLKLEEG
EGYDIPVGSV GLAWISGEKP VGFMAFLDVI RGIIIRMKSQ IYFFYSL
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