| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0937 |
|---|
| Symbol | |
|---|
| ID | 6962260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 1024234 |
|---|
| End bp | 1025859 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643382198 |
|---|
| Product | membrane protein |
|---|
| Protein accession | YP_002265229 |
|---|
| Protein GI | 209809690 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03368] cellulose synthase operon protein YhjU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.303935 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAA ACGCATCGCA CCCCCCTATT TATGGCCTTG GCTGGTGGAA TATTTATTTC
ATCATTAAGA TAGGCTTGTT TTCACAAGAC ATTATCAGCT TTCACCCGCT AGAGAACTTC
GCACTCGTTG CTTTTTTACT TATTCCATTA ACCCCTAAAG CACTAAAGGT AATGCGCCAA
TGCATCGCGA TTCCTGCTGG ATTATGGTTG CTGCACTTTG ACTCTTTCCT CCCCCCTTTA
GATCGCTTAT GGAGCCAGAT GGGGCAGCTA TTGCAGTTTA ATCTCAGCTA CCTTATCGAG
TTATCGGGTC GTTTTATCTC TACACAGGCA TTACTTGGTT TCTTTGTATT ACTCTTTGCG
TACTACTTTT TAAATCAAGT GTTCCGCATC TCTGTCTTTG TGGTTCTTGC TCTAATTTAT
ATGAGCCTTC CTCAACATTT TTTTGCTGAA CAACAAGAAA TCCCTCTTGC CGCTCAGCAA
CCGGTCATTA CACAAACAAC AACACCTTCT CTATCCAACA ACGATGAAAG TGGCCCTGTG
AATGACGCCG TATTAAACCA AGCCAAAGAG CTATTCTTTA AAAATGAAGC GCAACGTAAA
GTGACGTTTC CAACCACGGC ACCTTCCGCT AAGTTTGATC TTCTTTTCTT AAGTATTTGT
TCTGTCGCTT GGGATGACAT TGAAATTGCC GGATTAGAGA ATCACCCTCT GTTTAAAGAG
TTTGATGTGA TGTTTGATAA CTTCAGTGCT GCAACCTCTT ACAGTGGCCC AGCCGTTATT
CGTTTATTGA GAGCCAGTTG TGGACAAGAA ACACACCAAG AGCTATTTTC TCCACCATCC
TCTAAGCAAT GCTTCTTATT TGATGATCTT GCAAAACTAG GTTACCAAGA AAACCTAGTG
TTAAACCACG ATGGTAAATT TGATGATTTT TTAGGGTTGC TTGAAGAAGA TGGTGATTTA
AAAGCCCCAT TAATGTCACA AGCAGGATTA GTTCAATATC AATCCGCGTT CGATGGCTCG
CCAATATACC GAGATAAAGA TGTCCTTAAT CGCTGGTTAG GAGAACGAGA AAACGCAGAA
GATGGATCGA CGGTGGCACT TTATAACACC ATTTCATTGC ATGATGGTAA TCGTATTATC
AAAGCCAGTG GCAAAGTCGG ATTAGTGAGC TACAAACTTC GATTGAAAAA CCTACTTGAT
GATTTATACG GTTTCTTCCA AACGCTTAAA GCCTCAAAGC GAAATGTAGT TGTTATGCTT
GTACCAGAAC ATGGTGCGGG GATGCGTGGT GATAAAATGC AAATAGCAGG CATGCGTGAA
ATTCCATCAT CAGCGATTGT TCACACACCA GTAGGAATGA AGATCTTTGG CGAGAACATT
ACTCGCACAG GAGAGACGGT TCACATTAAT GCGGCATCGA GTTATCTCGC CGTATCAACA
TTGGTGAGTC GAATTTTAGA GCAGAATATT TACAGCAAGA CAACGTTTGA TCCAAAAGCC
TTAACTCAAG GACTACCAAA AACAAAAATG GTGGCGCAGA ACTCTGGCAC AACAGTAATG
GAATACAACA ACAAACCTTA CGTGTCTCTT GATGGCACAA CATGGTCTGA ATACCCAACA
AGGTAA
|
|---|
| Protein sequence | MKTNASHPPI YGLGWWNIYF IIKIGLFSQD IISFHPLENF ALVAFLLIPL TPKALKVMRQ
CIAIPAGLWL LHFDSFLPPL DRLWSQMGQL LQFNLSYLIE LSGRFISTQA LLGFFVLLFA
YYFLNQVFRI SVFVVLALIY MSLPQHFFAE QQEIPLAAQQ PVITQTTTPS LSNNDESGPV
NDAVLNQAKE LFFKNEAQRK VTFPTTAPSA KFDLLFLSIC SVAWDDIEIA GLENHPLFKE
FDVMFDNFSA ATSYSGPAVI RLLRASCGQE THQELFSPPS SKQCFLFDDL AKLGYQENLV
LNHDGKFDDF LGLLEEDGDL KAPLMSQAGL VQYQSAFDGS PIYRDKDVLN RWLGERENAE
DGSTVALYNT ISLHDGNRII KASGKVGLVS YKLRLKNLLD DLYGFFQTLK ASKRNVVVML
VPEHGAGMRG DKMQIAGMRE IPSSAIVHTP VGMKIFGENI TRTGETVHIN AASSYLAVST
LVSRILEQNI YSKTTFDPKA LTQGLPKTKM VAQNSGTTVM EYNNKPYVSL DGTTWSEYPT
R
|
|---|
| |