| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0906 |
|---|
| Symbol | hatB |
|---|
| ID | 6962238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 989719 |
|---|
| End bp | 991734 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643382172 |
|---|
| Product | iron-hydroxamate transporter permease subunit |
|---|
| Protein accession | YP_002265203 |
|---|
| Protein GI | 209809664 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0609] ABC-type Fe3+-siderophore transport system, permease component
[COG4779] ABC-type enterobactin transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGTC AGTTGAAGGG CGTTTCTTTC CGTTATCTAT CGGTACTTTG TGTATTGATT
GGGTTGGTGG TTGCTACGTT TCAATTTGAT GCTGTATTGA GTTTATCTCA GCAATGGCAA
GCAATAAGCC AAGCGAGTGT TGATCTCACT TTACTTGATG ACTTTGATAA GATCATCTTT
GTTGAGTCAC AATTGCCTCG TTTAATCATG GCACTTTTGG TTGGTGGAAT GCTTGGGTTA
GTCGGTAGCT TAATGCAACA ATTGACTCAG AATGCCCTCG TTTCCCCAAT GACACTTGGT
ACGGCATCTG GTGCGTGGCT AGCCTTAGTC ATTATGAATG TGTGGTTTGC TGAGTATGTG
GCTGATTATG CGTCTATGGC GACACTCGTT GGGGCATCGC TCACGTTTGG TTTAGTCGTT
GCTATTGCTG GTATTCGAAA TTTATCAGGC TTACCTATCG TATTATCTGG CATGGCTGTG
AATATTTTTC TGGGTGCTGT CGCCACCGCT ATTATTTTAT TAAATGAGCA ATACGCAAAG
AACTTGTTTA TTTGGGGAGC TGGGGATCTG GCTCAGAATG GATGGGATCA AATTGTATGG
TTATTACCTA AACTATTAGC AGCTGTACTT ATTTTTATTT TCGCGCCCAG AGTCTTAGCG
TTATTACGTT TGGGTAATGT TGGCGCTGCG GCTCGTGGGC TTAATGTTAT TCCTGCTTTC
TTTGGGTTAT TTACTGTTGG TTTATGGCTG GTTTCCTCTT CGATTACTGT GGTTGGCGTG
ATCAGTTTTA TTGGTTTACT TGCACCGAAT ATTGCGCGCC ATTTAGGAGC TAGAACTCCA
AGAGATGAAT TGTTCTTTAG CTTATTATTA GGCGCTACGT TATTAGTTGG TACTGATTTA
TTGGCGGTAG TGCTCAGTCA TTACACAACA GATATGATCC CAAGTGGAAC AGCGGCGGCA
TTCATTGGCG CACCTGCACT TATTTGGTTT ACTCGAAGAA ACATGAGCTC GCAAGATCAA
CTGTCGATCA GTTTACCAAA AGGGAAATCG TATTTACCAA CAGGGTTAAT TACATCATTG
ATTGTGGGTC TTGTGGTCGT CGCGGTTTTA GCTGTTGTGA TAACAAAAGA TTCAACCCAA
ACACTTGATC CGTGGGTAAT GATGATCCCA AGTGAGTTCA GTTGGGAGTT AAAATGGCCA
AGGCTACTTA CCTCTTTATC TGCAGGGGCT GGATTGGCAG TTGCAGGCGT ATTATTGCAA
CGATTGATTT ATAATCCTTT AGCAAGTCCT GATATTTTAG GTATCTCAGC GGGAGCGACA
TTAAGCTTAA TTGGTGGCAG CGTTTTTTTA GGGTTTAATA TCTTTGAAGC CGCGCCTCTT
GTGGCTTTTT GTGGAAGTTT AGCGGTATTA GTGCTGTTAC TGGTGCTAGG GAAGCGTCAT
CAGTATGCGC CTTCGATGCT CATTCTTACT GGGATAGCAT TAACGGCGTT AATCGACGCT
TTAGTCCAAT TTTCATTAGC AAAAGGGAAT GAGGATTCAT ATTCATTATT GAATTGGCTT
GCTGGTTCTA CTTATCGAGT GTCTCCCGAA TCTGCTTTTG TTTTGTTCTT TTGCGTCGTT
TTATTGGTGG CTTTTGCGTT ATTAACCCAT CGTTGGCTAA CTCTTATTTC AGCAGGTCGT
TTGTTTGCAC AAGCCAGAGG ATTAAACGTA ACTAAGAGTT TTATCGCATT GCTTATTTGT
GTTGCGTTAC TTTGTGGTGC AGTAACTGCT ACCATGGGGC CGATTGCATT TATAGGCTTA
CTTGCTCCCC ATATGGCGGT TCTTTTAGGG GCGAAAAAAG CATTTGAACA GATTGTCGTA
GCGGCATTAA TTGGCGCTTG GTTAATGGTG ATTGCTGATT GGTTAGGTCA GCATATTTTA
TTTCCATCTC AAGTGGCGGC AGGAACGTTA GTGTCAGTGA TTGGTGGCAT TTACTTTATT
GGTTTGCTGA TAAAAGGCCA ACGCTCTACA CATTAA
|
|---|
| Protein sequence | MSSQLKGVSF RYLSVLCVLI GLVVATFQFD AVLSLSQQWQ AISQASVDLT LLDDFDKIIF
VESQLPRLIM ALLVGGMLGL VGSLMQQLTQ NALVSPMTLG TASGAWLALV IMNVWFAEYV
ADYASMATLV GASLTFGLVV AIAGIRNLSG LPIVLSGMAV NIFLGAVATA IILLNEQYAK
NLFIWGAGDL AQNGWDQIVW LLPKLLAAVL IFIFAPRVLA LLRLGNVGAA ARGLNVIPAF
FGLFTVGLWL VSSSITVVGV ISFIGLLAPN IARHLGARTP RDELFFSLLL GATLLVGTDL
LAVVLSHYTT DMIPSGTAAA FIGAPALIWF TRRNMSSQDQ LSISLPKGKS YLPTGLITSL
IVGLVVVAVL AVVITKDSTQ TLDPWVMMIP SEFSWELKWP RLLTSLSAGA GLAVAGVLLQ
RLIYNPLASP DILGISAGAT LSLIGGSVFL GFNIFEAAPL VAFCGSLAVL VLLLVLGKRH
QYAPSMLILT GIALTALIDA LVQFSLAKGN EDSYSLLNWL AGSTYRVSPE SAFVLFFCVV
LLVAFALLTH RWLTLISAGR LFAQARGLNV TKSFIALLIC VALLCGAVTA TMGPIAFIGL
LAPHMAVLLG AKKAFEQIVV AALIGAWLMV IADWLGQHIL FPSQVAAGTL VSVIGGIYFI
GLLIKGQRST H
|
|---|
| |