| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0864 |
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| Symbol | |
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| ID | 6962573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 947503 |
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| End bp | 949050 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643382135 |
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| Product | transcriptional regulator, sigma-54 interaction protein |
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| Protein accession | YP_002265166 |
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| Protein GI | 209809627 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGTCTTG AAGTACAGTG TAAAGATCGA TTAGGTCTAA CCCGTGAGTT ACTTGATATT
CTTGCTTCTC AGAGTATTGA TTTACGAGAT ATCGAGATTG ATAAATCGGG CTTAATTTAC
CTTAACTTTC CTGAAGTTGA CTTTGAAGAG TTTAGTCTAT TAATGGCAAA AATTCGACGA
ATCGATGGGG TTATTGATGT AAGAAAAATT CAATTCTTAC CGAGTGAACG TCGTAATACC
GAATTGCTTG CGGTATTGAG TACATTACCA GACCCTGTTT TTTCGATTAA TTTAAAAGGT
AAAATTGACA CGGTAAATCA CGCGGTAATG TCATTGTTTA AATTAGAAAG AGAGGCGTTA
ATAGCTCAAC CAGCGACGGT TCTTGTTCCT GATTTTAATG TCATGCTTTG GTTAGAAGAG
TCGCGTATTC GTCAACGTGA ATCAATGAAA GTTGATGGTG TTGCTTATGT GATGGAAATT
ATGCCGGTAT ACATTACGAA TGACAGTAAT GCATCGATAC TGGTAAGCGC GGTGGTAATC
ATTAAGCCCG CAGTAGAATC ACAGCACGCA AGACCTTTTA TCCCTGAATC GTCTAATTTG
GGTTTTGAGC ATTTTGTCGG CTCATCGACT AAATACAAAA AATTGATTTC TCAAGCGAAA
AAACTGTCCG ATATTGATCA ATCTTTGCTT ATTCAAGGAG AGACGGGAAC GGGCAAAGAA
ATGCTAGCAC GTGCTTGTCA TAATGCTTCT ATTCGTTCGG GTAAGGCATT CATGGTAGTT
AACTGTGCAG CCATGCCTGA TGACGTTGCG GAGACTGAAT TATTTGGTTA TGCCCCTGGT
GCGTTTCCAA ATATGCCAGA AGGAAAGAAA GGGATTATTG AACAAGCCGA TGGCGGAACC
GTTTTCTTTG ATGAAATCAG TGAAATGAGC CCTCTATTAC AGATTAAGTT ATTACGTTTC
ATCCAAGATG GTAATTTTCG TCGTGTTGGA GAAGAGAAAG AAATTCACGT TGATGTAGGT
ATTATTGGCG CGAGTAAGAA AGAACTTCTA GACTTAGTAG AACAAGGCAT ATTCCGAGAA
GACCTTTATT ATCGATTGAA CGTGTTGTTT TTAGAGATCC CGCCATTGCG TGAGCGCCCA
TCAGATGTTG CTACGTTATT TGAATTTTTT GTTGCTCAAT TATGCAAAGA GTTAGGTATC
GTTAAACCGT CGATATCGGA AGATGTTTAT GAGTATTTAC GCAGTTATTC GTGGCCTGGA
AACGTGAGAC AGCTGAAAAG TGCAACCTTA AAAGCCCTAA CTCAGATGGA CCGAAATCAG
TTGAATATTT CTCATTTCAT GTTGCCTAAT ATGGATAAAA ATAGTACGAA TATGATGAAT
CTCAATATAG ATGGTACGTT GGATGAAATC ATGAAAACCT ATGAATCTAC TATTTTATCA
AGTTTGTATA GTGATTTTCC ATCGAGCAGA AAACTCGCTA AACGTCTGGG TGTTTCTCAT
ACTGCAATTG CGAATAAATT ACGTGATTAT GGTATCGGTA AGAAGTAG
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| Protein sequence | MRLEVQCKDR LGLTRELLDI LASQSIDLRD IEIDKSGLIY LNFPEVDFEE FSLLMAKIRR
IDGVIDVRKI QFLPSERRNT ELLAVLSTLP DPVFSINLKG KIDTVNHAVM SLFKLEREAL
IAQPATVLVP DFNVMLWLEE SRIRQRESMK VDGVAYVMEI MPVYITNDSN ASILVSAVVI
IKPAVESQHA RPFIPESSNL GFEHFVGSST KYKKLISQAK KLSDIDQSLL IQGETGTGKE
MLARACHNAS IRSGKAFMVV NCAAMPDDVA ETELFGYAPG AFPNMPEGKK GIIEQADGGT
VFFDEISEMS PLLQIKLLRF IQDGNFRRVG EEKEIHVDVG IIGASKKELL DLVEQGIFRE
DLYYRLNVLF LEIPPLRERP SDVATLFEFF VAQLCKELGI VKPSISEDVY EYLRSYSWPG
NVRQLKSATL KALTQMDRNQ LNISHFMLPN MDKNSTNMMN LNIDGTLDEI MKTYESTILS
SLYSDFPSSR KLAKRLGVSH TAIANKLRDY GIGKK
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