| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0735 |
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| Symbol | msbA |
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| ID | 6962508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 809075 |
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| End bp | 810823 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 643382009 |
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| Product | lipid transporter ATP-binding/permease protein |
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| Protein accession | YP_002265047 |
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| Protein GI | 209809509 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTATTG AAAAAGACGA ATCTACATGG GCAACGTTTA AACGATTATG GCCTCATATC
TCACTGTATA AAGCGGGGCT AGGGGTTGCA GTTTTTGCCC TTGTCATTAA TGCATTAAGT
GATACTTATA TGATCTCATT ACTAAAACCA CTTTTAGATG AAGGTTTTGG TAACGCGGAT
TCAGATTTCT TGAAAAAAAT GCCATTTATC ATCTTAGCTA TGATGTTTAT TCGTGGTTTC
AGTGGCTTTG TTTCTGGTTA TTGTATGAGT TGGGTTGCGA GTAATGTTGT AATGCGAATT
CGCCGTGATA TTTTTAATCA TTTTATGCAT ATGCCAGTAA GTTATTTTGA TCAAGAATCT
ACAGGTCGAT TATTATCTCG TATTACCTAT GATTCAGAAC AGGTGGCTTC TGCAACCAGT
AAAGCTTTGG TTAATATTGT GCGAGAATCG GCAAGCATAC TTGGTTTACT TGGCTTGATG
TTTTGGAACA GTTGGCAGTT GTCTTTAGTA CTTGTTGTTG TTGCACCTGT TGTTGCGTTC
GCTATTGGTA ATGTCTCAAA ACGTTTTAGA AAAATCAGTA AGAACATGCA AACAGCCATG
GGTTCATTGA CTGCGACTTC AGAGCAAATG CTTAAAGGTC ATAAAGTGGT ATTAAGCTAT
GGTGGTCAAA AAGTTGAATC TGAACGTTTT GATACGATCA GTAACCATAT GCGTCAACAA
AATATGAAAA TGGTTGTTGC TCAAGGTTTA GCGAATCCTA TTATTCAAAT GATTGCTTCT
TTTGCTTTAG TTACGGTTTT ATATCTAGCA AGTGTTGATT CAATTAAAGA AACGCTAACT
CCTGGTACCT TTACGGTTGT GTTCTCTGCG ATGTTCGGTT TATTACGTCC ACTAAAAGGA
CTAACAAGCG TAACGTCTGA TTTCCAACGA GGTATGGCGG CATGTCAAAC GTTGTTTGAA
CTGATGGATA TGGATAAAGA GAAAGATGAC GGTGTGATTG TTAAAGATAA AGTCAATGGT
GATATTAAAG TTGAAGATGT CACGTTTACT TATCCTACGT CTGAAGGGCC AGCATTACGT
AGTGTTAGCT TTGATTTACC AGCTGGAAAA ACAGTTGCAT TAGTTGGACG TTCTGGTTCA
GGTAAAAGTA CGATTGCTAA TTTATTTACA CGTTTTTATG ATGTAGATTC GGGTACTATT
TCGTTAGATG GTGATGGACT TGAAGATTAT AAATTAACGA ATCTTCGTAA GCATTTTGCG
TTAGTTTCTC AAAATGTGCA TTTATTTAAT GACAGTGTTG CGAATAATAT TGCGTATGCG
TCCGAAGGTA GATTTACTCG AGCTGAGATA GAGAAAGCGG CAGAGCTTGC TTATGCGTCT
GACTTCATCA ACAAGATGGA AGATGGTTTT GATACGATGA TTGGTGAAAA TGGCGCGAGT
CTATCCGGTG GACAACGTCA ACGTATCGCC ATTGCTCGAG CTCTATTACA AAATGCATCC
GTACTAATTC TTGATGAAGC GACATCTGCA TTGGATACCG AATCAGAAAA AGCGATTCAA
TCTGCGTTAG ACGAGCTTCA AAAGGACAAA ACAGTTCTTG TGATTGCGCA CCGTTTATCG
ACGATTGAAA GTGCAGATCA GATCCTTGTT ATTGATGAAG GTGAAGTTGT TGAGCGTGGT
ACTCATGCAG AATTGATTGC TCACGACGGT GCTTATGCCC AATTGCATCG AATTCAATTT
GGTGATTAA
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| Protein sequence | MTIEKDESTW ATFKRLWPHI SLYKAGLGVA VFALVINALS DTYMISLLKP LLDEGFGNAD
SDFLKKMPFI ILAMMFIRGF SGFVSGYCMS WVASNVVMRI RRDIFNHFMH MPVSYFDQES
TGRLLSRITY DSEQVASATS KALVNIVRES ASILGLLGLM FWNSWQLSLV LVVVAPVVAF
AIGNVSKRFR KISKNMQTAM GSLTATSEQM LKGHKVVLSY GGQKVESERF DTISNHMRQQ
NMKMVVAQGL ANPIIQMIAS FALVTVLYLA SVDSIKETLT PGTFTVVFSA MFGLLRPLKG
LTSVTSDFQR GMAACQTLFE LMDMDKEKDD GVIVKDKVNG DIKVEDVTFT YPTSEGPALR
SVSFDLPAGK TVALVGRSGS GKSTIANLFT RFYDVDSGTI SLDGDGLEDY KLTNLRKHFA
LVSQNVHLFN DSVANNIAYA SEGRFTRAEI EKAAELAYAS DFINKMEDGF DTMIGENGAS
LSGGQRQRIA IARALLQNAS VLILDEATSA LDTESEKAIQ SALDELQKDK TVLVIAHRLS
TIESADQILV IDEGEVVERG THAELIAHDG AYAQLHRIQF GD
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