| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0696 |
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| Symbol | mfd |
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| ID | 6962071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 762036 |
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| End bp | 765491 |
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| Gene Length | 3456 bp |
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| Protein Length | 1151 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643381974 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002265012 |
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| Protein GI | 209809474 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.221423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTATTA CTAATTTACT GTCATTATCA TTACCAACAA AAGCCAATGA TACCCGCTCT
GTTGGTAATC TAACGGGCTC ATCTCTTGCA CTTGCTATTG CAGAGATAGA GCAACAACAC
ACTGGTCCTA TCGTGGTTGC GGTTACCGAG CCACAATTGG CGTTTCGTTT ACAAAATGAA
ATTAACCAAT TTAGCCAACA GTCTGTCGAG GTTTTTCCTG ATTGGGAAAC ACTTCCTTAT
GACAGTTTCT CACCGCATCA GGACATTATT TCAGATCGCT TATCGCGCTT ATATCATTTG
CCTAAGCAGA AGAATGGCAC GCTAATCGTT CCGGTAAGTA CCTTATTGCA GCGACAATCA
CCACAATCTT TTCTGCACAA GCACGCCTTA GTAGTAAAAG TAGGTGATCA TCTGTCGTTT
GATAAACTCA AGCTGCAATT AGAAAAATCA GGCTACTTGC ACGTTGATCA AGTCATGAGT
CATGGTGAAT ACGCAAGCCG AGGGTCCATA TTAGATTTAT TCCCAATGGG GAATTCTCTG
CCTTATCGTA TCGACTTTTT TGATGATGAA ATTGATACCA TCCGTCAGTT TGACCCTGAT
AATCAACGCA CGATTGAAGA AGTAAAATCA ATCAATCTAC TCCCTGCTCA CGAATTCCCA
ACGGATGATG TAGCGATTGA AGATTTCCGT ATTCGTTGGC GTCAGCGTTT TGATGCGCGC
CGTGAACCAG AATCCGTTTA TCAACAAATC AGTAAAGGGG CTTGGCCTGC TGGTATCGAA
TACTGGCAAC CTCTGTTTTT TGATGAAACA GAAACCCTAT TTGATTATCT ACCAGACAAC
ACGTTATTAG TGACGATTGG TGATATTGAA AAAGCCGCAG ATGATTTCTT AGCGGATGCT
GAATATCGTT ACGAGCAACG TCGTGTTGAT CCTCTTCGCC CTCTTCTTCC TGTGAATGAA
TTGTGGTTAA GAACGACCGA TATGTTTGGC TTCTTCAAAC ACTATCCACG AATCAAATTA
GCGAAAGAAC CTGAGATTGA AAAAGCCGGT CGTTTTAATC CTGATTTATT AGAATTGCCT
GAAATTGCTA TTCAACATCA GAATAAAGAA CCGTTTGCTC AATTCCGTCA GTTCTACGAA
AAATTCAGTG GCCAAGTCAT CTTCTCTGTT GAATCAGAAG GTCGCCGAGA AGCATTATTA
GAATTATTAG CACGTATTAA GCTAAAACCT TCTATTTGTG ATTCCTTAAA AGACGCCGTA
GCGCATAAGA ACAAAGCGAC GTTAGTGATC GGTTCTGCTG AGCGTGGTTT CATTCTTCAA
AACCCATGCG TTGCCTTTAT TTGTGAAAGT GACCTACTGG GTGAGCGCGT AATACAGCGT
CGTCGACGTG GTGACAACAA AGCCGTTAAT AGCAATACCA TCATTCGTAA CCTTGCTGAA
CTAAAAGTCG GTCAACCTGT CGTTCACTTA GATCACGGTA TTGGTCGTTA TATGGGGCTT
CAAACATTAG ATGTTGGTGA TATGCCAGCA GAATACATGA TGTTAGAGTA CCTAAACGAA
ACGAAACTGT ATGTTCCCGT GTCTTCACTT AATCTCATTA GCCGTTACTC AGCCGGCGCA
GATGATTCTG CACCAATCAG TAAGCTAGGC AGTGATGCAT GGGGCAAAGC TCGTCGTAAA
GCCGCAGAGA AAGTCCGCGA TGTAGCCGCA GAGCTATTGG ATGTTTACGC CAAGCGCGCC
ATTAAACTTG GATTTGCCTT TAAACAAGAT AAAGAAGCTT ACGCTGATTT CAGATCAAGC
TTTCCGTTTG AAGAAACGCA CGACCAAGAA ATTGCGATTA ACGACGTTTT ATCTGATATG
TGCCAAGCAA AAGCAATGGA TCGTCTAGTT TGTGGTGATG TTGGCTTTGG TAAAACAGAA
GTCGCAATGC GTGCCGCGTT CTTAGCAACA AACAATGAAA AACAAGTGGC CGTATTAGTT
CCTACGACCC TACTTGCTCA ACAGCATTTT GAAAATTTCC GAGACCGTTT CGCTAACTTC
CCTATTCGTG TGGAAGTATT ATCTCGATTC AAATCAGCCA AAGAACAAAA AGAAATTTTA
GCGGCAACTG CAGAAGGTAA AGTTGATATT CTGATCGGTA CGCACAAATT ATTACAAGAC
AGTATTAAAT TTGATGATCT TGGTTTATTG GTTGTGGATG AAGAACACCG CTTTGGGGTT
CGTCAAAAAG AAAAAGTAAA AGCAATGCGT TCGGATGTTG ATATTCTGAC CCTAACCGCG
ACCCCCATTC CAAGAACATT AAACATGGCA ATGAGTGGCA TGCGTGATTT ATCTATCATC
GCAACGCCTC CAGCTCGTCG TTTAGCGATC AAAACCTTCG TGCGTGAAAA AGCCGATGAT
GTCATTAAAG AAGCGATTCT TCGTGAAATC AAACGTGGTG GCCAAGTCTA TGTCTTACAT
AATAATGTAG AGACCATTGA AAGCGCGGCG AAAGACATTG AAAACCTGAT CCCTGAAGCG
CGAGTTACTT TGGCTCACGG TCAAATGCGT GAGCGTGAAT TAGAGCGCAT CATGGGTGAT
TTTTATCATC AACGTTTTAA TGTTTTAGTC TGTACGACCA TTATAGAAAC CGGTATCGAT
GTTCCAACGG CCAATACCAT TATTATGGAG CGTGCCGATA AACTGGGTCT AGCGCAATTA
CACCAACTGC GTGGGCGTGT TGGTCGTTCT CACCACCAAG CGTATGCGTA TTTACTAACG
CCTCATCCAA AAGCACTAAG CAAAGATGCC GTTAAGCGTT TAGATGCTAT CGCGTCTCTT
GAAGACTTAG GAGCCGGTTT TACTCTAGCA ACACACGATT TAGAAATCCG TGGTGCGGGT
GAATTACTGG GTGATGGACA AAGTGGGCAA ATCCAATCCG TTGGTTTTAC GCTTTACATG
GAAATGCTAG AACAAGCCGT TGAAGCATTA AAAGAAGGCA AAGAGCCCTC TTTAGATGAT
TTATTACGAG AACAAACCGA GGTCGAATTA CGCTTACCCG CGTTAATTCC AGAAGAGTAT
ATCCCAGATG TCAATACTCG ACTGTCTCTC TATAAGCGTA TTGCTAGTGT TTCAAGCAAT
GGCGAATTAG ATGAGCTTAA AGTTGAAATC ATTGACCGTT TTGGCTCTTT ACCTGAAGCG
GCACAAACAT TATTAATCAG CGCAGAAGTT AAAATGCTTG CTGCATCGAT AAAAGTGAAG
AAATTGGAAG CTCACGGCAA TGGCGGTTAC ATCGAATTTG AACCAACGGC AGACATTAAT
CCAATGTTCT TAGTTGGATT ACTGCAAAAA GACCCAACCG GGTTTGCTTT AGATGGACCG
ACTAAAATTA AATTTATAAA AGACTTAACA GAGAGACAAG TGCGAATTAA ATACGTAATG
GACTTGCTCA ATTTGTTTAA CGAAAATAGA ATCTAG
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| Protein sequence | MPITNLLSLS LPTKANDTRS VGNLTGSSLA LAIAEIEQQH TGPIVVAVTE PQLAFRLQNE
INQFSQQSVE VFPDWETLPY DSFSPHQDII SDRLSRLYHL PKQKNGTLIV PVSTLLQRQS
PQSFLHKHAL VVKVGDHLSF DKLKLQLEKS GYLHVDQVMS HGEYASRGSI LDLFPMGNSL
PYRIDFFDDE IDTIRQFDPD NQRTIEEVKS INLLPAHEFP TDDVAIEDFR IRWRQRFDAR
REPESVYQQI SKGAWPAGIE YWQPLFFDET ETLFDYLPDN TLLVTIGDIE KAADDFLADA
EYRYEQRRVD PLRPLLPVNE LWLRTTDMFG FFKHYPRIKL AKEPEIEKAG RFNPDLLELP
EIAIQHQNKE PFAQFRQFYE KFSGQVIFSV ESEGRREALL ELLARIKLKP SICDSLKDAV
AHKNKATLVI GSAERGFILQ NPCVAFICES DLLGERVIQR RRRGDNKAVN SNTIIRNLAE
LKVGQPVVHL DHGIGRYMGL QTLDVGDMPA EYMMLEYLNE TKLYVPVSSL NLISRYSAGA
DDSAPISKLG SDAWGKARRK AAEKVRDVAA ELLDVYAKRA IKLGFAFKQD KEAYADFRSS
FPFEETHDQE IAINDVLSDM CQAKAMDRLV CGDVGFGKTE VAMRAAFLAT NNEKQVAVLV
PTTLLAQQHF ENFRDRFANF PIRVEVLSRF KSAKEQKEIL AATAEGKVDI LIGTHKLLQD
SIKFDDLGLL VVDEEHRFGV RQKEKVKAMR SDVDILTLTA TPIPRTLNMA MSGMRDLSII
ATPPARRLAI KTFVREKADD VIKEAILREI KRGGQVYVLH NNVETIESAA KDIENLIPEA
RVTLAHGQMR ERELERIMGD FYHQRFNVLV CTTIIETGID VPTANTIIME RADKLGLAQL
HQLRGRVGRS HHQAYAYLLT PHPKALSKDA VKRLDAIASL EDLGAGFTLA THDLEIRGAG
ELLGDGQSGQ IQSVGFTLYM EMLEQAVEAL KEGKEPSLDD LLREQTEVEL RLPALIPEEY
IPDVNTRLSL YKRIASVSSN GELDELKVEI IDRFGSLPEA AQTLLISAEV KMLAASIKVK
KLEAHGNGGY IEFEPTADIN PMFLVGLLQK DPTGFALDGP TKIKFIKDLT ERQVRIKYVM
DLLNLFNENR I
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