| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0685 |
|---|
| Symbol | gnd |
|---|
| ID | 6962066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 749393 |
|---|
| End bp | 750841 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643381963 |
|---|
| Product | 6-phosphogluconate dehydrogenase |
|---|
| Protein accession | YP_002265001 |
|---|
| Protein GI | 209809463 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0362] 6-phosphogluconate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGTG ATATTGGTGT AATTGGTCTT GCTGTAATGG GACAAAATCT AATTCTTAAT
ATGAATGATC ACGGTTTTAA AGTGGTTGCT CATAACCGTA CAGCGACAAA AGTAGACGAA
TTCCTAGAAG GACCAGCAAA AGACACAAAT ATTGTTGGTG CTTATTCATT GGAAGAACTT
GTTGAGAAAC TAGAAACACC ACGCAAAATT ATGTTAATGG TACGTGCTGG TGACGTTGTT
GATACATTTA TTGATAACCT TGTTCCTTTA CTAGATAAAG GCGACATCAT TATTGATGGT
GGTAACACAA ACTTCCCTGA TACAAACCGC CGAGTAGCTG CACTTAAAGA AAAAGGCATT
TACTTTATTG GTACTGGTGT TTCTGGTGGT GAAGAAGGTG CTCGTTTTGG TCCTTCAATT
ATGCCTGGAG GCTCACCAGA AGCATGGCCA TTTGTTAAGC CAATCTTCCA AGCTATCTCT
GCAAAAACAG ATGACAATGA ACCATGTTGT GATTGGGTTG GTAACGACGG TGCTGGTCAC
TTTGTTAAAA TGGTACACAA TGGCATCGAA TACGGTGACA TGCAGCTAAT CACCGAAGCA
TACCAATTCA TGAAAGATGG TTTAGGTATG AATCATGATG AAATGCAATC TGTGTTTACT
GATTGGAACG AGACTGAGTT AAATAGCTAT TTAGTCGAAA TTACAGCGGA TATTCTTGGT
TATAAAGACG AAGATGGTGA GCCGTTAGTT GAAAAAATCC TTGATACAGC CGGCCAAAAA
GGTACGGGTA AATGGACGGG TATCAATGCA CTTGATATGG GTATTCCACT GACGCTGATC
ACTGAATCTG TCTTCGCTCG TTGCCTATCT GCACTAAAAG ATCAACGTGT TGAAGCAGAG
CAATTGTTTG CTAAAACAAC CGTTGCAGTT GAAGGCGATA AGCAAGTATG GATTGATGCG
TTACGCCAAG CGTTACTTGC ATCTAAGATT ATTTCTTATG CTCAAGGTTT CATGTTAATG
CGTGAAGCGT CAAATGAAAA TGGTTGGGAT CTAAATTACG GTAATGTGGC GCTAATGTGG
CGTGGCGGTT GTATTATCCG TTCTGCTTTC TTAGGCAATA TTCGTGATGC ATATGATACG
GATGCTGAAC TGTCGTTCTT AGGTTCAGAT GTTTACTTTA AGACTATTTT AGAAAACAGC
TTAACTGCAT GGCGTAAAGT TGCTTCTAAA TCAATGGAAG TGGGAATTCC AATGCCTTGT
ATGACATCGG CATTAACGTT CTTAGATGGT TATACAACAG CCCGCTTACC CGCTAACTTA
CTGCAAGCAC AGCGTGATTA TTTTGGTGCT CATACTTATG AACGCTTAGA TAAACCAAGA
GGCGAGTTCT TCCATACTAA TTGGACTGGT AAAGGTGGCG ATGTTTCGTC AACAACTTAT
AACTCTTAG
|
|---|
| Protein sequence | MKGDIGVIGL AVMGQNLILN MNDHGFKVVA HNRTATKVDE FLEGPAKDTN IVGAYSLEEL
VEKLETPRKI MLMVRAGDVV DTFIDNLVPL LDKGDIIIDG GNTNFPDTNR RVAALKEKGI
YFIGTGVSGG EEGARFGPSI MPGGSPEAWP FVKPIFQAIS AKTDDNEPCC DWVGNDGAGH
FVKMVHNGIE YGDMQLITEA YQFMKDGLGM NHDEMQSVFT DWNETELNSY LVEITADILG
YKDEDGEPLV EKILDTAGQK GTGKWTGINA LDMGIPLTLI TESVFARCLS ALKDQRVEAE
QLFAKTTVAV EGDKQVWIDA LRQALLASKI ISYAQGFMLM REASNENGWD LNYGNVALMW
RGGCIIRSAF LGNIRDAYDT DAELSFLGSD VYFKTILENS LTAWRKVASK SMEVGIPMPC
MTSALTFLDG YTTARLPANL LQAQRDYFGA HTYERLDKPR GEFFHTNWTG KGGDVSSTTY
NS
|
|---|
| |