| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0671 |
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| Symbol | vcaM |
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| ID | 6962055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 734170 |
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| End bp | 735993 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643381950 |
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| Product | ABC-type multidrug efflux pump, ATP-binding component |
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| Protein accession | YP_002264988 |
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| Protein GI | 209809450 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.123836 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAAAT TCTTTGAGCG GATCACTACC GCTTTCCCTG AACAAGAACC AGAACAACCA
CCAAAAGGGT TGTATGCTTT TTGTCGCCAT TACACCAAAG GGTTCGGAGT TCCTTTAATC
GGCATGTCAG TACTTAGTGC TATCATCGCC ATGGTTGAAG TGTCTCTTTT TGGGTTTATG
GGGCAATTAG TTGATTGGCT ATCCACTCAT AACAGAGACA CCTTTTTAGC ACAGGAAGGA
CAAACCTTAA TGTGGTTAGG TATTCTTGTT GTTATTGGAA TGCCAATTTT AATCTTGATG
CATTCATTAA TTACACACCA AACGTTATTG GGTAATTATC CAATGGCTAT TCGCTGGCAA
GCGCATCGAT ACCTTTTAAA ACAAAGTGTT TCTTTTTATT CAGATGATTT TGCTGGTCGT
ATTGCAACAA AAGTAATGCA AACCTCATTA TCGGTCCGTG AAACCGTAAT GAAGCTACTT
GATGTGCTTA TCTATATTTC TGTTTATTTT ACCTCCATGA TTGTGATGGT AGGAAAGGCA
GATTGGCGTC TCATGTTACC TATGCTTATT TGGCTTGCGG CATACATTGC AATTCAATTT
TACTTCGTCC CTAGAATGAA AGCCGTTTCA GAGAAGCAGG CCGATGCTCG TTCTACAATG
ACAGGACGCA TTGTCGACAG TTACACCAAC ATCAATACGA TCAAATTGTT CAGCCACAGT
AAGCGCGAAA CTGAATACGC GAAAGAAGGC ATGGACGATT TTTTAGTGAC GGTTCATAAA
CAAATGCGTT TAGCTACTGG CATTAATATC TCTGTAGAGA TCATTAACTA CTTATTAGTC
TTCTCAATTA CCGCGGTTTC TATCATGCTG TGGATTGATA ATGAGTTATC TGTTGGGGCT
ATTGCGATTG CGATCAGTTT AGCGTTACGT ATCAATGGTA TGTCTCATTG GATCATGTGG
GAAATAAGCT CCCTATTTGA AAACCTAGGC ACGGTGACGG ATGGAATGAA TACCTTATCC
AAACCAATTA CCATCAATGA TAAACCTGAC GCTACAGAGC TTTCTGTTAA GCATGGAAAT
ATTCAATTTA AGAATGTTAA CTTCCATTAT GGCGAGAACA AAGGAGTTAT TAATAATCTA
AACCTTGATA TCAAACCGGG AGAAAAAATA GGGTTGGTGG GACGTTCTGG TGCTGGTAAA
TCAACATTAG TGAACTTGTT ACTTCGTTTC CATGATATTG AATCAGGGTC TATATCTATT
GATGGCCATG ATATTCGCGA TGTTTCTCAA GATTCACTAC GTAGTCAGAT AGGCATGGTG
AGCCAAGATA CTTCCCTACT TCATCGCTCT ATTCGTGACA ATATCAAATA TGGTCGTCCT
GATGCGTCTG ATGAAGAGTT GTTTGCAGCA ACCAGACAAG CACAAGCTCA TGAGTTTATA
GAAACCTTAA CGGATTCTTA TGGCAGTACT GGCTATGATG CACAAGTTGG TGAAAGAGGA
GTGAAACTCT CTGGTGGTCA ACGCCAACGA GTTGCTATAT CTCGCGTGTT GTTAAAAGAT
GCCCCTCTAT TGATTTTAGA TGAGGCAACC TCTGCACTTG ATTCTGAAGT AGAATCCGCT
ATTCAAGACA GCCTAGATGA ATTAATGGAA GGAAAAACCG TTATTGCTAT TGCTCATCGT
CTATCAACGA TTGCCGCAAT GGATCGCTTA ATTGTCATGG ACCAAGGCCA AGTTGTTGAG
CAAGGAACCC ATAAAGAACT CGTTGAGTTC GGCGGTATTT ATGCCCAATT ATGGACCCAT
CAAACTGGTG GCTTTATAAA ATAA
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| Protein sequence | MFKFFERITT AFPEQEPEQP PKGLYAFCRH YTKGFGVPLI GMSVLSAIIA MVEVSLFGFM
GQLVDWLSTH NRDTFLAQEG QTLMWLGILV VIGMPILILM HSLITHQTLL GNYPMAIRWQ
AHRYLLKQSV SFYSDDFAGR IATKVMQTSL SVRETVMKLL DVLIYISVYF TSMIVMVGKA
DWRLMLPMLI WLAAYIAIQF YFVPRMKAVS EKQADARSTM TGRIVDSYTN INTIKLFSHS
KRETEYAKEG MDDFLVTVHK QMRLATGINI SVEIINYLLV FSITAVSIML WIDNELSVGA
IAIAISLALR INGMSHWIMW EISSLFENLG TVTDGMNTLS KPITINDKPD ATELSVKHGN
IQFKNVNFHY GENKGVINNL NLDIKPGEKI GLVGRSGAGK STLVNLLLRF HDIESGSISI
DGHDIRDVSQ DSLRSQIGMV SQDTSLLHRS IRDNIKYGRP DASDEELFAA TRQAQAHEFI
ETLTDSYGST GYDAQVGERG VKLSGGQRQR VAISRVLLKD APLLILDEAT SALDSEVESA
IQDSLDELME GKTVIAIAHR LSTIAAMDRL IVMDQGQVVE QGTHKELVEF GGIYAQLWTH
QTGGFIK
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