Gene VSAL_II0657 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_II0657 
Symbol 
ID6962044 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011313 
Strand
Start bp706964 
End bp708316 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content39% 
IMG OID643381936 
ProductATP-dependent RNA helicase 
Protein accessionYP_002264974 
Protein GI209809436 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAGTGGC AGCTTTTGCA ATTTAAAGAT TTAGGTTTAG ATAATCGCCT ATTAAAAAAT 
CTCGCTCATC AAAACATTAA AAAACCAACT GAAATTCAAC GTAAAGCCGT ACCTGTTGCC
ATGGCAGGGA AGGATGTTCT TGCGTCGTCT AAAACGGGTT CTGGTAAAAC ATTAGCATTC
GTATTACCGA TGCTTCATAA ATCACTTAAA TCGAAATCAT TCTCTAAGAA TGACCCTCGT
GCTGTGATTT TAGCACCAAC ACGTGAACTA GCAAAACAAG TGTATATGCA CCTGCGTGCA
ATGTTAGGTG GTTTAACGTA CGATGCTGCA TTGATCACTG GTGGTGAAAA CTTTAACGAC
CAAGTGAACG CATTACGTAA ATTCCCTAAA TTTATTGTCG CGACACCAGG ACGCTTAGCG
GATCATCTTG AGCATCAATC TCTGTTCTTG AATGGTTTAG AAATGCTTAT TCTTGACGAA
GCTGACCGTA TGCTTGATTT AGGTTTTGCT GAGCATTTAC AAAAAATTCA TGCGGCAGCA
AATCACCGTC GACGTCAAAC GCTTATGTTC TCTGCAACAT TAGACCATGA AGCAGTGACT
AAATTTGCAG GCAACATGCT AGATAATCCT AAAGTTGTTT CTGTTGGTTT ATCAACGGAT
CAGCATGCAG ATATCACGCA AAGTTTCTAC TTGTGTGATC ATTTAGATCA TAAACAAGCG
TTGTTAGATA AAATCATTGA AACGGAAAAA TACTTCCAAA TCATGATATT CACAGCAACA
CGTGCAGATA CCGATCGCTT AACTGATTTA CTTAACGAAC GTAAATTAAA AGCGGTAGCA
TTAAGTGGTG ATATGAACCA AACCGCTCGT AATAATATTA TGAGTCAGTT TGAACGTCGT
GCACATAAAA TCCTAGTAAC GACTGATGTT GCTTCTCGTG GTTTAGATTT AACCAGTGTA
ACTCACGTTA TCAACTTTGA TATGCCAAAG CATATGGAAG AGTATGTTCA CCGCGTTGGT
CGTACTGGTC GTGCTGGTAA GAAAGGGACA GCAATTTCTC TTGTCGGACC AAAAGATTGG
GAAAGCTTTA AGCGTATAGA GACATTTTTA CAACAAGACT TGGCGTTCTC TGAATTCGAA
GACTTGAAAG GTAAATTCAA AGGTCTTAAG CCAAAACATA AACGTGAATT TGTGAAAAAA
GGCGATGATA AGAAAACGAC TGCAAAACGT GGTTCTTATA CTCCTAAAAA ATCGAAAAAA
CGCGATAACA CATTCCACAC TAATGTGGCT GTAGGCGAGC AAGTATTTAT GCCAAAGAAA
AAACCAAAGC AAATTGTTGT TGATGATGAA TAA
 
Protein sequence
MEWQLLQFKD LGLDNRLLKN LAHQNIKKPT EIQRKAVPVA MAGKDVLASS KTGSGKTLAF 
VLPMLHKSLK SKSFSKNDPR AVILAPTREL AKQVYMHLRA MLGGLTYDAA LITGGENFND
QVNALRKFPK FIVATPGRLA DHLEHQSLFL NGLEMLILDE ADRMLDLGFA EHLQKIHAAA
NHRRRQTLMF SATLDHEAVT KFAGNMLDNP KVVSVGLSTD QHADITQSFY LCDHLDHKQA
LLDKIIETEK YFQIMIFTAT RADTDRLTDL LNERKLKAVA LSGDMNQTAR NNIMSQFERR
AHKILVTTDV ASRGLDLTSV THVINFDMPK HMEEYVHRVG RTGRAGKKGT AISLVGPKDW
ESFKRIETFL QQDLAFSEFE DLKGKFKGLK PKHKREFVKK GDDKKTTAKR GSYTPKKSKK
RDNTFHTNVA VGEQVFMPKK KPKQIVVDDE