| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0576 |
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| Symbol | treR |
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| ID | 6962542 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 630004 |
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| End bp | 630948 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643381863 |
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| Product | trehalose repressor |
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| Protein accession | YP_002264901 |
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| Protein GI | 209809363 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02405] trehalose operon repressor, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGAAGA AATTGACGAT CCTTGATGTT GCGAAACTGG CTGGCGTTGG GAAATCAACC
GTATCTCGTG TATTAACGAA CGATCCTAAA GTGAAGTTAG AAACTCGTCA AAAAGTAGAA
CAGATAATTA AAGAATCTGG TTTTATCCCT TCCAAATCGG CTCAAAGCAT GCGTGGTGGC
AGCCAGAAAG TCATTGGTGT TATTACTTCT CGTCTTGACT CTCCCTCTGA AAATAAAGCC
GTTAGCGGTA TTCTAGAGGT TATCTACCAA CATGGTTATG ATGCAGTGAT CATGGAAAGT
CAGTTTGATG CTCAAAAAAC GAATGAACAT TTAGAGGTAT TAAGACGACG CAGCGTTGAT
GGTGTGATTT TTTTCGGATT TACACATTGT GATATGACTG AGATTGAGCG TTGGAATGAG
CGCATGGTTG TGATCGCAAT GGATACTGAT AAAGTCAGCT CGATTAATTA TGATAATGAA
GGGGTTATTC GACAAGCGCT TTACCATCTG TCTGACATGA ACTTGCAGAA CATTGCCTAT
ATTGGCGTTG ATCCTAGTGA CAAAACAACG GGTAAATTGC GTCTAGAGGC TTACCTTGAG
TGGTGTCATG AGCGAAACCT TCCCCCAAAG TTTGCGACAG GGCAGCTTGA TCACCAAAGT
GCGTATGCGT TAGTTGATTC TGTTTTAGAC CGAGAATTAC AGGCCATTGT GTGTGCGAGT
GATACGATAG CGCTTGGGGT AGCAAAACGG CTTCAGGAGT TACACCGTAA TGACATTCAA
GTAACCGGTG TCGGTGGGCA TGAGCTACTT TCTTTCTTAT TTCCAAATAT CATCAGTATT
AACCCTGGTT ATCAATTAGC GGGAAAAAGT GCCGCTAAGC AGCTTTTACA GCAATTAGAT
GGCAACGTAA CGATCACGCA TCTTACTCAG TCACTGACGG TTTAG
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| Protein sequence | MTKKLTILDV AKLAGVGKST VSRVLTNDPK VKLETRQKVE QIIKESGFIP SKSAQSMRGG
SQKVIGVITS RLDSPSENKA VSGILEVIYQ HGYDAVIMES QFDAQKTNEH LEVLRRRSVD
GVIFFGFTHC DMTEIERWNE RMVVIAMDTD KVSSINYDNE GVIRQALYHL SDMNLQNIAY
IGVDPSDKTT GKLRLEAYLE WCHERNLPPK FATGQLDHQS AYALVDSVLD RELQAIVCAS
DTIALGVAKR LQELHRNDIQ VTGVGGHELL SFLFPNIISI NPGYQLAGKS AAKQLLQQLD
GNVTITHLTQ SLTV
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