| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0570 |
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| Symbol | |
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| ID | 6961971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 623349 |
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| End bp | 625034 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643381857 |
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| Product | putative RNA pseudouridylate synthase |
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| Protein accession | YP_002264895 |
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| Protein GI | 209809357 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCCAA TGTCTGATCC TTGCTTTACT TCTTTTGTAC ACCCTCTCGA TAGCTATTCT
TTACCTGAGC GATTCACTTT CCCGTTTTAC TATGAACCGC ATCCATTATG TGAGCTCGCC
GCCAAGCAGT TACAGGGTCA CTTAATATCC CAAACAGAAT GGCAACACAA CTTTGGATTA
GAAGAAAGCA ACGATAAAGC CATTGGTAAA ATGTTTGGAG TATTACTTGT ACGCCACCCT
TCTGGTGAAG TCGGATTTTT ATCTGCTTTT TCAGGAAAAA TTGCTGACAG TAATCACCTC
CCACATTTTG TTCCTCCCGT ATTTGATATG CTCAAGGAAG ACGGTTTTTT TAAAACTGAA
TTGGCAGACA TTACCGATAT AAACACGGCG ATAAAACAAC AACAAAGCAA TCCGTTATTG
GGCGAATTAA GCACCACTCT ATCTATAGAA AACACAATCT CTCAAGAACA ACTTGAAGCC
CAGCGCCAAG TCATGATCGA AGGCCGAAAA TCACGAAAAG AACAACGTGC AGATGCAGAA
CGTAATGCAT CATCAGAATC CGGCGAGCGC TTAAAAATAG AATTAGGAAA GCAGAGTGTT
CAAGAAAAGA ACGCCCTGAG AGATTTAAAA ATACATTGGG ACACAAGAAT CAATAAAATT
CAGTCTCAAT TAGATGACTT AAATAACGCT ATTAACGCAT TAAAAACACG TCGTAAAGTG
TTATCTTCTG CCTTACAAAA AAAATTGTTC CAACAATACA AATTCCTAAA CATCCATGGC
GTAGAAAAAG ATCTTAACGA TATTTTTAAA GATACCCCAA ATCATGTTCC TCCAGCAGGC
TCTGGCGAAT GTGCCGCACC AAAATTGCTT CAATACGCAT TTGCACATGG TTTTACCCCA
CTTGCTTTGG CTGAATTTTG GTGGGGAAGC GCTCCAAAAT CAGAAATACG TCAACACAAA
AAATTCTATG CGTCTTGTCA AAGTAAATGC CAACCAATCT TAGGGCATAT GTTGGATGGT
ATTGAAATGG ATGAAAACCC ACTGTTAATC AATCCAGCAG AAGGCAAAGA CATCGATATT
ATTTATGAAG ATGAATTTAT GCTCATCATC AATAAGCCAG CGGATTTCTT ATCGGTACCG
GGTAAAAATA TTAATGACTC TGTTTATACC CGCGTACAGC AACGTTACCC AAATGCAACT
GGTGGGCTAA TTGTGCATCG CTTAGACATG GCAGCCTCTG GTTTAATGGT TTTAGGGTTA
ACCAGTAAAG CGCATAAACG TCTGCAGAAA CAGTTCATCA ATCGTACTGT AGAAAAACGC
TACACCGCAT TACTTGATGG TTTATTACCA CATCGCGAAG GACAGATCAC GTTACCATTG
CGTGGGGATC TTTATGACAG ACCGCGTCAG TTAGTCTGCT TTGAATACGG AAAACAGGCA
GAAACAACGT ATAACGTGAT TGAATATAAA GAAAAGCAAA CTCTTGTGCA CCTTTACCCA
AAAACAGGGC GAACTCATCA ATTACGTGTG CATTGTGCCC ACCACTTAGG ATTAAATATG
CCTATCATCG GTGATGGTTT ATATGGTCAA AAAGCGGATC GTTTATATCT GCACGCGGGC
TATTTATCAG TGACTCACCC AATAACAAAA GAGCCTATGG AATTTGTAGT TGAGGCTCGA
TTTTAA
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| Protein sequence | MMPMSDPCFT SFVHPLDSYS LPERFTFPFY YEPHPLCELA AKQLQGHLIS QTEWQHNFGL
EESNDKAIGK MFGVLLVRHP SGEVGFLSAF SGKIADSNHL PHFVPPVFDM LKEDGFFKTE
LADITDINTA IKQQQSNPLL GELSTTLSIE NTISQEQLEA QRQVMIEGRK SRKEQRADAE
RNASSESGER LKIELGKQSV QEKNALRDLK IHWDTRINKI QSQLDDLNNA INALKTRRKV
LSSALQKKLF QQYKFLNIHG VEKDLNDIFK DTPNHVPPAG SGECAAPKLL QYAFAHGFTP
LALAEFWWGS APKSEIRQHK KFYASCQSKC QPILGHMLDG IEMDENPLLI NPAEGKDIDI
IYEDEFMLII NKPADFLSVP GKNINDSVYT RVQQRYPNAT GGLIVHRLDM AASGLMVLGL
TSKAHKRLQK QFINRTVEKR YTALLDGLLP HREGQITLPL RGDLYDRPRQ LVCFEYGKQA
ETTYNVIEYK EKQTLVHLYP KTGRTHQLRV HCAHHLGLNM PIIGDGLYGQ KADRLYLHAG
YLSVTHPITK EPMEFVVEAR F
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