Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_II0565 |
Symbol | rhlE |
ID | 6961968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011313 |
Strand | + |
Start bp | 617633 |
End bp | 618961 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643381852 |
Product | putative ATP-dependent RNA helicase RhlE |
Protein accession | YP_002264890 |
Protein GI | 209809352 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGGCT ATTATCTTAG CTTTGAGCCC TTTATATTAA TGACCACTAT CACAACGCCT GCCAACTTTA CAGAACTTGG CCTTATTACA CCTTTGTTAG CTCGATTAAC TGAGCTGGAA TATCAACAGC CAACGCCAAT TCAAGCGCAA GCTATTCCAA GTGTATTGGC TGGGCGTGAC TTAATTGCAG GGGCAAATAC AGGTTCAGGT AAAACAGCAA CGTTCGCACT GCCTATATTA CAGCAGTTGC ATGAAGATAA GCCTTTTAGC ACTAAAAGTG GGAAAGGTAA CTATGTTACT GGATTGATTT TAGTTCCGAC TCGTGAATTG GCAAAACAAG TTGCTGACAG TATTAAATCT TATGCTGTGC ATTTTAACGG TGCAATTAAA ACCGTTGCTG TTTTTGGTGG CGTATCTGCA AATACTCAAA TGCTGGCTTT ACGTGGCGGC ACTGATATTT TAGTAGCCAC ACCGGGTCGA TTACTCGATC TTATTTCAAG TAATGCTATT AAGCTTGATA AAGTCAAAAC ATTAGTGCTT GATGAAGCCG ATCGAATGTT AAGCCTTGGC TTTACTGAAG AGCTATCAGC GTTATTGGAT TTATTACCAA AGCAAAAGCA GACGTTATTG TTTTCAGCGA CTTTTCCTGA ACAAGTACAA ACATTAACTC AAGAACTGCT TAACGATCCT ATTGAAATTC AAGTGCAAAG CGCAGATGCA AGTACTTTGG TACAGCGTGT TTTTACCGTT AATAAAGGTG AAAAAACCGC ATTGCTAGCG CATTTGATCA AACAAAACGA ATGGCGACAA GCACTTATCT TCGTTAATGC GAAAAATAGT TGTGAGCATT TAGCGGATAA ACTGTCTAAA CGTGGAATTA CCGCTGAAGT ATTTCATGGT GATAAAGGCC AAGGTGCGCG TACTCGTATA CTTGAAGCAT TTAAATTGGG TGAGATTGAA GTTTTAATTG CGACAAATAT TGCTGCTCGT GGTTTAGATA TCGAAAAACT ACCGGTTGTT ATTAATTTTG ATTTGCCAAG AAGTCCATCA GATTATATGC ACCGTATTGG TCGAAGTGGT CGTGCTGGGG AAGTTGGTTT AGCATTATCA CTTATCGATC ATGAAGATTA CCATCACTTT AAAATCATCG AGAAGAAGAA CAAAATTCGA CTAGAACGTG AAGAAGTTGA AGGTTTTGAA GTCGATGAAG CAGTAAGTGA TTCTTTATCA GACGTAGAAA AGCCGATGGC AAAACCTGAA GGCACTGGTA AGAAAAAACG TAAAAATAGA GCATCAGCAG ATGAAGATGT TTGGTTGAGA AATTACTAA
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Protein sequence | MAGYYLSFEP FILMTTITTP ANFTELGLIT PLLARLTELE YQQPTPIQAQ AIPSVLAGRD LIAGANTGSG KTATFALPIL QQLHEDKPFS TKSGKGNYVT GLILVPTREL AKQVADSIKS YAVHFNGAIK TVAVFGGVSA NTQMLALRGG TDILVATPGR LLDLISSNAI KLDKVKTLVL DEADRMLSLG FTEELSALLD LLPKQKQTLL FSATFPEQVQ TLTQELLNDP IEIQVQSADA STLVQRVFTV NKGEKTALLA HLIKQNEWRQ ALIFVNAKNS CEHLADKLSK RGITAEVFHG DKGQGARTRI LEAFKLGEIE VLIATNIAAR GLDIEKLPVV INFDLPRSPS DYMHRIGRSG RAGEVGLALS LIDHEDYHHF KIIEKKNKIR LEREEVEGFE VDEAVSDSLS DVEKPMAKPE GTGKKKRKNR ASADEDVWLR NY
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