Gene VSAL_II0520 details

Gene Information

• Locus tag: VSAL_II0520
• Symbol: tktA
• ID: 6961929
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: -
• Start bp: 578747
• End bp: 580738
• Gene Length: 1992 bp
• Protein Length: 663 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 643381810
• Product: transketolase
• Protein accession: YP_002264848
• Protein GI: 209809310
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCGTA AACATTTAGC TAATGCTATT CGTGCTCTAA GCATGGACGG CGTACAACAA 
GCAAACTCTG GTCACCCTGG CGCACCAATG GGCATGGCTG ACATCGCTGA AGTACTTTGG 
CGCTCTCACC TAAACCATAA CCCTGCAAAC CCTGATTGGG CTGATCGCGA CCGTTTCATT 
CTTTCGAATG GTCACGGTTC TATGCTGATT TATTCTCTGC TTCACCTTGC AGGTTATGAA 
TTATCAATTG AAGATCTTAA AAACTTCCGT CAATTGCATT CTAAAACACC AGGCCACCCT 
GAGTATGGTT ATGCACCAGG CATCGAAACA ACGACCGGTC CTCTAGGCCA AGGCATCACA 
AATGCCGTTG GTATGGCGAT GGCTGAAAAA GCATTAGCCG CGCAGTTCAA CAAAGAAGGC 
CACGACATCG TTGATCACTT CACTTATGCC TTCATGGGTG ATGGTTGTTT GATGGAAGGT 
ATCTCTCATG AGTCATGCTC TCTAGCGGGT ACGCTTGGTC TTGGTAAGCT GGTTGCTTTC 
TGGGATGACA ACGGCATCTC TATCGATGGT GAAGTGGAAG GTTGGTTCTC TGACGATACG 
CCTAAACGTT TTGAAGCGTA CGGCTGGCAT GTAATTCCTG CGGTTGATGG TCACGATGCA 
GATGCAATTA ATGCAGCAAT CGTAGCAGCA AAAGCAGACC CTCGCCCTAC TCTGATTTGT 
ACTAAAACTA TCATCGGTTT TGGTTCTCCA AACAAACAAG GTACACACGA CTGTCACGGT 
GCTCCACTAG GCTACGACGA AATTAAAGCA GCGAAAGCAC AATTAGGTTG GGAGTACGGT 
TCTTTTGAAA TCCCGTCGGA AGTTTACGCA GAATGGAACG CGAAAGACGC AGGCGCAACT 
AAGGAAGCGG CGTGGAATGA GAAGTTTGCA GCTTATGAAG CAGCCTACCC AGAACTTGCA 
GCAGAATTTA CTCGCCGCGT AAACGGTGAT TTACCAGCAG AGTGGGAAGA AAAAGCAAAT 
GCAATCATTG CAGAGCTTCA AGCTAATCCT GCAAACATCG CATCACGTAA AGCATCACAA 
AATGCATTAG AAGCGTTCGG TACCATGTTA CCTGAATTCA TGGGCGGCTC TGCTGACCTT 
GCTCCTTCTA ACCTAACAAT GTGGTCTGGT TCTAAGTCAC TAACCGCGGA TGATTTCTCT 
GGCAACTACA TTCACTACGG TGTTCGTGAA TTTGGTATGA CAGCTATCAT GAACGGCATG 
GCGTTACACG GTGGTTTCGT ACCTTACGGC GCAACATTCC TAATGTTCAT GGAATACGCG 
CGTAACGCAA TGCGTATGGC TGCACTGATG AAAATTCAGA ACATTCAAGT GTACACACAC 
GATTCAATCG GTCTAGGCGA AGATGGTCCA ACTCACCAAC CGGTTGAGCA AGTGGCTTCT 
CTACGTCTAA CACCAAACAT GAGCACATGG CGTCCATGTG ACCAAGTTGA ATCTGCTGTA 
GCATGGAAAC TTGCTATTGA ACGTCGCGAT GGCCCATCAG CACTTATCTT CTCTCGCCAA 
AATCTTGCAC AACAAGAGCG TGATGCAGAG CAAGTAGCGA ACATTGCTAA AGGCGGTTAT 
ATCCTTAAAG ATTGTGAAGG CCAACCTGAG CTTATCTTTA TTGCGACGGG TTCTGAAGTT 
CAACTTGCTG TTGAAGCCGC AGCGCAACTT ACGGCTGAAG GTAAAGCGGT ACGTGTTGTA 
TCAATGCCTG CAACTGATGC ATTTGATAAA CAAGATGCAG CGTACCGCGA AGCGGTTCTG 
CCATCATCAG TAACGAAACG TATTGCAATT GAAGCCGGCA TTGCTGACTT CTGGCACAAA 
TACGTTGGTT TTGGTGGTAA GATCATCGGT ATGACAACGT TTGGCGAATC AGCACCGGCT 
GAAGAGCTGT TCAAAATGTT TGGTTTCACT ACTGAAAATG CAGTGAAAAC AGCAAAAGAG 
CTTTTAGCTT AA 

 

Protein sequence

MNRKHLANAI RALSMDGVQQ ANSGHPGAPM GMADIAEVLW RSHLNHNPAN PDWADRDRFI 
LSNGHGSMLI YSLLHLAGYE LSIEDLKNFR QLHSKTPGHP EYGYAPGIET TTGPLGQGIT 
NAVGMAMAEK ALAAQFNKEG HDIVDHFTYA FMGDGCLMEG ISHESCSLAG TLGLGKLVAF 
WDDNGISIDG EVEGWFSDDT PKRFEAYGWH VIPAVDGHDA DAINAAIVAA KADPRPTLIC 
TKTIIGFGSP NKQGTHDCHG APLGYDEIKA AKAQLGWEYG SFEIPSEVYA EWNAKDAGAT 
KEAAWNEKFA AYEAAYPELA AEFTRRVNGD LPAEWEEKAN AIIAELQANP ANIASRKASQ 
NALEAFGTML PEFMGGSADL APSNLTMWSG SKSLTADDFS GNYIHYGVRE FGMTAIMNGM 
ALHGGFVPYG ATFLMFMEYA RNAMRMAALM KIQNIQVYTH DSIGLGEDGP THQPVEQVAS 
LRLTPNMSTW RPCDQVESAV AWKLAIERRD GPSALIFSRQ NLAQQERDAE QVANIAKGGY 
ILKDCEGQPE LIFIATGSEV QLAVEAAAQL TAEGKAVRVV SMPATDAFDK QDAAYREAVL 
PSSVTKRIAI EAGIADFWHK YVGFGGKIIG MTTFGESAPA EELFKMFGFT TENAVKTAKE 
LLA