| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0504 |
|---|
| Symbol | |
|---|
| ID | 6961915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 563172 |
|---|
| End bp | 566165 |
|---|
| Gene Length | 2994 bp |
|---|
| Protein Length | 997 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 643381795 |
|---|
| Product | signal transduction protein, histidine kinase |
|---|
| Protein accession | YP_002264833 |
|---|
| Protein GI | 209809295 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.284164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAATA CTGACTTATA TTTTAAAACT AGAGCTAGGA CTATCGATCA CTTAGGACGA
GAACAAATTG CAGACTGTCC GACAGCAATC TCTGAACTGT GGAAAAATGC TTACGATGCT
GATGCTGATG AAGTTGCTCT TCATATATTA GATGGAGAGA AATCAATTGC CGCAATCGTA
GATAATGGTT TTGGCATGAA TGCTAGTGAT TTTGAAGAAA AATGGTTGAC TGTTGGTACT
GAATCTAAAA TAGAGTCTCT AAACTCGAAC GAACAAGTTA TACGTAAATA TAACCGTCAG
AAACAAGGAC AAAAAGGAAT TGGGCGTCTT TCCTGTGCTG CACTTGGTCA TCTTTTATTG
TTAATAAGTA AGGCTGAAGG TCATCCATTT GTTGTTAGCT TAATAGATTG GCGATTGTTT
GAAAACCCTT TCATTATGTT ACATGATATT TCAATTCCTG TGGCAGAAGT TGTTAGCATT
GAAGAACTAT ATGGTGAAAT AGTTCATTTA TGTGAGCGTT TGCTATTCAA TGTTACGCCT
ACTCGAGAAG ATAATTCAGC AAGAGCTAGC AGACTTCGTG ATGCATGGAA AATGTACGCA
GAATATGAAA TAAATGAACA AAAAAAGCAG AACTCTGAAT TAATTGGATT TAAATCTACG
CATGATTTGA TTATAGAACA GACAAATAGT TCTTTATTTA CTGAGCGTGT AGTAAGAACT
TGGCAAGTTG CAAATGATAC GTCTTCCACA GGTACAGCAA TGTTTATGGT TGGTATTCCT
GATGACTTAG AAGATCAATT GGTACTTGAA TCAATTCAAG ATGTAGATGA TGCAACAGCT
CGAGCAAAGC TTAAATTACT TGAAACATTG TCAAATTTTA CGGACCCATT TGTAAAACCT
AAAGAGAAAA AGAATGATCC ATTTCTCACG AGTGTTACTG CATGGAATGG GCAGTTACAA
AGAGAATTAG TAAGTGATAT TCGTGAGTTT GATATTAGTG ATTTAGAGCA AATGGAACAC
TTAGTTGATG GGCATGTGGA TGAAGAAGGT TATTTCAGAG GAACTATTAA AGCATTTGGT
CAAGTATATG AAAACCAAGT CATAAAGCCG AAGCAAAAAT ATAGAACACG AATTGACTCA
AGATTTGGTG CATTTGATAT TAGAATTGGT GGTTTTGAAG GGCAAAAAAA TAGATCAAGT
ATGCCTGAAA CCTTGTGGAA TAATATTCAA AATAAGTCTG ATTTACATGG CGGTTTACGG
ATTTATAGAG ATGGATTACG AGTAATGCCT TATGGGCGTG ATGATAGTGA TTTTTTTGAA
ATAGAAAAAA GACGTACAAA TAATGCTGGT CGTTACTTCT GGTCGTCTCG TAAAACATAT
GGGCGTATTA GTATATCTCG TTTAGGCAAC CCTAATTTAA AAGATAAAGC AGGTCGTGAA
GGATTGCTTG ATAATCGTGC AGCAATGTTG TTTAGAGAGA TAATTATTGG AATTTTGATC
CAAACAGCAG AACAATATTT TGGCCGAAAG TCAGATATTA GACAAGAGGC TTTAGAAGAT
ATTGCCGCAC AACGAGCGGA AGAAAAAGCT AAGTTAGACA GAAAAAAACT TTTAAGAAAC
GAGCGAAATA GAGTTAAAAA AGGAATACAG ACTCAACAAC CAGAATTATC CGCATTTTTA
GATGAGCTTG AAGAGTTACA GGCCGATTTA GCTCATGGAG AGGAAATAAT TAATCTCCAG
CAAGCTAAAG AGTTGAAAGG TTTATCGAAT AAATATAATG AAAAGCTTAA AAGTTTTTCT
TTAAGTCCTG TACCACCAAG TTTAGGTACT ATAAAAGAAA ACTATGAGGG TTATCGTTCT
TTAGAGCTAA GATCGCAAGA AATTACAAGG AGATTGAATG TTACTGCAGA TACCGCGATC
AATAAATACA TAACTAAAAC CGACACTGAA GTTGCTAAAT CACAGTTAAA TACTAATCGA
GGATATATTA CGGCAAAAGT TAAGAAATTG GCACTGGAAG GACGAACCTT ATTAAAAAGT
GAGTTAGAAA GATTTGAACA ATTAGTAACT AGTTGTAATA AGGCTTATGA TATTGCCTTA
TCTGAGGTAA TGCGAGATTT AGAGCTTGGT AAACTAACTT CATCTGAGGC TATGAAGCAA
ATTGATGATG AGTATCAAAA ACAAGAAATA AATAATGAAC AAGCATTAAA GCCATATGTA
ACAGCCTTAA ATAGTATTAA AAATGCAATA GATTTAGAAG GATTAGCCAT TGAAAGTTTA
CGTGAATCTA ATAAATGGCA ACAAGAAGCT ACTAGATTAA ATGGCTTAGC TCAGTTAGGT
ATTACTGTAG AAATCATTGG TCATGAAATC GAAGGGCTTG ATATCACTAT GGCTCGTGGG
ATCTCTGATT TAAGAAAAAC CCATTTAAAT GATGTTCAGA ATCAGTTAGT TGATTCTGTC
GATTTTGCAC ACCAAAGCCT AAGTGATAAA TGGCGTTTTT TAACACCATT AAAACTTTCT
GGTGAACATA CTAAAACTAA TGTTACTGGT CTTGCAATTA TTGATTATGT TCGGAATTTT
TATGGAGATA GTTTAGCAAA ACGAAATATT AGTTTAACTA CTACAAGTTC TTTTGAGCAG
TTTAATGTGC ATGACTCACC AGCAAGGTTA TATCCTGTAT TTATAAATTT AATAAACAAT
TCAAGATATT GGTTAAATAT TAAAGGCGAT AACGTTAAAG AAATTTGTCT GGATTATAAA
AATGGTGAAG TGGTCATTGC TGATAACGGC CCCGGTGTCG ATTTAGTTGA TTTAGAACGG
TTATTTACAT TGTTCTTTAC TAAAAAGCAG AGAGGAGGCC GAGGGGTTGG GTTATATCTT
AGTAAATCAA ATTTGGCCTT ATCTGGCCAT ACGATTCGTT ATATTACAAA TGATGATGAA
AAATCACTAA ATGGTGCTAA TTTCGCGATA AAGATCGGAG GGCTTCTAAA ATGA
|
|---|
| Protein sequence | MANTDLYFKT RARTIDHLGR EQIADCPTAI SELWKNAYDA DADEVALHIL DGEKSIAAIV
DNGFGMNASD FEEKWLTVGT ESKIESLNSN EQVIRKYNRQ KQGQKGIGRL SCAALGHLLL
LISKAEGHPF VVSLIDWRLF ENPFIMLHDI SIPVAEVVSI EELYGEIVHL CERLLFNVTP
TREDNSARAS RLRDAWKMYA EYEINEQKKQ NSELIGFKST HDLIIEQTNS SLFTERVVRT
WQVANDTSST GTAMFMVGIP DDLEDQLVLE SIQDVDDATA RAKLKLLETL SNFTDPFVKP
KEKKNDPFLT SVTAWNGQLQ RELVSDIREF DISDLEQMEH LVDGHVDEEG YFRGTIKAFG
QVYENQVIKP KQKYRTRIDS RFGAFDIRIG GFEGQKNRSS MPETLWNNIQ NKSDLHGGLR
IYRDGLRVMP YGRDDSDFFE IEKRRTNNAG RYFWSSRKTY GRISISRLGN PNLKDKAGRE
GLLDNRAAML FREIIIGILI QTAEQYFGRK SDIRQEALED IAAQRAEEKA KLDRKKLLRN
ERNRVKKGIQ TQQPELSAFL DELEELQADL AHGEEIINLQ QAKELKGLSN KYNEKLKSFS
LSPVPPSLGT IKENYEGYRS LELRSQEITR RLNVTADTAI NKYITKTDTE VAKSQLNTNR
GYITAKVKKL ALEGRTLLKS ELERFEQLVT SCNKAYDIAL SEVMRDLELG KLTSSEAMKQ
IDDEYQKQEI NNEQALKPYV TALNSIKNAI DLEGLAIESL RESNKWQQEA TRLNGLAQLG
ITVEIIGHEI EGLDITMARG ISDLRKTHLN DVQNQLVDSV DFAHQSLSDK WRFLTPLKLS
GEHTKTNVTG LAIIDYVRNF YGDSLAKRNI SLTTTSSFEQ FNVHDSPARL YPVFINLINN
SRYWLNIKGD NVKEICLDYK NGEVVIADNG PGVDLVDLER LFTLFFTKKQ RGGRGVGLYL
SKSNLALSGH TIRYITNDDE KSLNGANFAI KIGGLLK
|
|---|
| |