| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0476 |
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| Symbol | sapD |
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| ID | 6962582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 535213 |
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| End bp | 536226 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643381768 |
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| Product | peptide transport system ATP-binding protein SapD |
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| Protein accession | YP_002264807 |
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| Protein GI | 209809269 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCATTAT TAGATATTCG TCATTTGACT ATCGAGTTAG AGACCCCGCA AGGGATGGTG
AAAGCCGTCA ACCGCATGAG TTTAACCATT AATGAAGGTG AAATTCGCGG ACTTGTGGGC
GAATCAGGAT CCGGTAAATC TCTGGTCGCT AAAGCGATTC TTGGGATCAC AAAAGATAAT
TGGAAGATCA CCGCCGACAG AATGCGCCTA GGCAATATAG ATCTCTTGGC ACTGTCTCCA
AAACAAAGAC GACGCGTCAT TGGCCGAGAG ATGGCAATGA TCTTTCAAGA GCCATCAACG
TGTCTCGATC CTTCAGAACA AGTAGGACAA CAACTTGAAG AAGCGATCCC GTCAAAGTAC
TTTTCTGGTA AATGGTGGCA ACGTTGGAAT TGGCGTAAAA AAGGAGCCAT CGCCTTATTG
CATAAAGTCG GGATTAAAGA GCATAAGCGC GTAATGCGAT GTTACCCTTA TGAGCTTACT
GCTGGGGAAT GCCAAAAAGT AATGATCGCA ATGGCAATTG CGAACAAACC ACGAATTTTG
ATTGCTGATG AACCGACCGA TGAACTCGAT GCGGTGACAC AATCACAAAT ATTTCGTCTA
TTAAGTCGAA TGAATCAGGT CAATAATACG ACGATTCTAT TGATCAGCCA TGATTTGATC
ACTCTGACTC AATGGGTAGA TAGAATTACC GTTATGTACT GTGGTCAATC GGTTGAATCT
GCGGGTCGTA AAGAAATTCT TGAGGCTCCA AAACATCCTT ATACCAATGC ATTACTGCGT
GCGATGCCTG ACTTTAGTAA AGATGGAATC CCTCATAAAG CAAAGTTAGA ATCATTACCG
GGGACAATCC CTCCCTTACA GCATTTACCT ATTGGTTGTC GTCTTGGGCC TCGTTGTCCT
TACGCTCAAC GCAAATGCGT ACAAGTTCCT GAAGGTCAAA AAGTGAAAGA TCATAAATTC
AGTTGCCATT TTCCATTAAA TTTCGAGGAG AAGAAAAATG ACTGCACTTC TTGA
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| Protein sequence | MPLLDIRHLT IELETPQGMV KAVNRMSLTI NEGEIRGLVG ESGSGKSLVA KAILGITKDN
WKITADRMRL GNIDLLALSP KQRRRVIGRE MAMIFQEPST CLDPSEQVGQ QLEEAIPSKY
FSGKWWQRWN WRKKGAIALL HKVGIKEHKR VMRCYPYELT AGECQKVMIA MAIANKPRIL
IADEPTDELD AVTQSQIFRL LSRMNQVNNT TILLISHDLI TLTQWVDRIT VMYCGQSVES
AGRKEILEAP KHPYTNALLR AMPDFSKDGI PHKAKLESLP GTIPPLQHLP IGCRLGPRCP
YAQRKCVQVP EGQKVKDHKF SCHFPLNFEE KKNDCTS
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