| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0439 |
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| Symbol | deaD |
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| ID | 6962574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 496944 |
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| End bp | 498869 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 643381733 |
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| Product | cold-shock DEAD box protein A (ATP-independent RNA helicase) |
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| Protein accession | YP_002264773 |
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| Protein GI | 209809235 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.251569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGAAA CTATTACTGA ATTTCGCCAA CTGGCTTTAG AAGAAACTTT ATTATCTGCT
CTTGATGAAA TGGGCTTTGT TGCTCCAACA CCAATTCAAG CAGAATCAAT TCCTCTATTA
TTAGCTGGTC GTGATGCACT TGGTAAAGCA CAGACAGGTA CTGGTAAAAC AGCTGCTTTC
TCTTTGCCTC TTTTAAACAA AATCAACCTT AAGCAACATA ACCCACAAGC AATCATCATG
GCTCCAACGC GTGAACTTGC TATTCAGGTT GCTGCTGAAG TTAAGAATCT TGGTCGTAAC
ATCAAGGGTC TTAAAGTTTT AGAAATCTAC GGTGGTGCTT CTATCGTTGA TCAAATGCGT
GCCCTAAGTC GTGGCGCACA CATTGTTGTT GGTACTCCTG GTCGTGTTAA AGATTTACTT
AACCGTGACC GTCTAAACCT TGGCGAAGTT CATACGTTCA TCCTTGATGA AGCCGATGAA
ATGCTAAAAA TGGGTTTTGT TGATGATGTG ACTTGGATTC TTGAAAAAGC GCCAGAAACA
GCTCAACGTA TCCTGTTCTC TGCAACTATG CCACCAATGG TTAAGACAAT TGTTGACCGT
TACCTACGTG ATCCTGCTCG TGTTGATGTT GCTGGTACTA ACAATACTGT TGAACAAGTA
ACGCAAAACT TCTGGATTGT TAAAGGCGTA GAAAAAGACG AAGCAATGTC TCGTCTACTT
GAAACTGAAG AAATTGATGC ATCAATCGTA TTCGTTCGTA CTCGTCAAGA TACAGAGCGT
CTAGCTGATT GGTTATCTGC TCGTGGCTTT AAAGCTGCTG CATTGCACGG TGATATTCCT
CAGTCTCTAC GTGAGCGTAC TGTTGACCAT ATCAAACGCG GCGTTATCGA TATCCTAGTT
GCAACAGATG TTGTTGCTCG TGGTCTTGAT GTTCCTCGTA TTACACACGT ATTTAACTAC
GACATCCCAT TCGATGTTGA GTCTTACATC CACCGTATCG GCCGTACTGG TCGTGCTGGA
CGTAAAGGTA AAGCGATTCT TTTAGTTCGC ACAAACCAAA TTCGTATGCT TCGTACTATT
GAACGTGTAA CTAAATCTTC AATGGTAGAA ATCGAACTTC CACATCGCGA TCAAGTTGCA
GAAGCTCGTC TAGCGGTTCT TGGTGCTGAA TTAGCAGCAG ATAAAGAATT CGTTGCACTA
GAAGCATTCT CTGACTTAAT CACTAAGCTT CAGGAAACTC TAGAAGTTGA TGCATCAACA
ATTGCTGCAA TGCTTCTTAA GCGTCAACAA GGTAAGCGTC CTTTATTCTA TAAAGGTCCA
GATCCAATGA TCGCAGCAGT AGAACGTTCG AAAAATCGTC GTCCTGAGCG CGGTGATCGT
GGTGACCGTC CTGAACGTGG TGACCGTCCT GAACGTGGTG ACCGTCCTGA CCGTGGCGAA
CGTCGTCAAT ACAACAATGA CGATTTCGAT ACGTACCAAT TAGAAGTTGG TCGTGATCAA
GGCGTTCAAG TTAAAGACAT CGTAGGTGCT CTAGCTAACG AACTTGGTTT CACTAAAGGT
GCTATCGGTG CAATCAAACT TGCTCCGGGT CACACATACG TACAGCTTCC TAAGAAAATG
TCTTCTGACG TTGCAAGCAA GCTTAAGCAA TTACGTATTC GTCAAAACGA AGTGAAAGCG
GTTGTTGTTG AAGGCGTTGA CCTAACAATT GATCGTCGTC CTCGTACTGG CGGTGGCGCT
GGTGATAGCG CTGGTGCTGG TGCAGGCCGT GGTGGTTACC GTGGCAATCG CGAAGGCGGT
GCTGGTGCAG CTCGTGGTGG CGAACGTCGT TTTGACCGCA ACAAAGGTGG CGATCACCGT
GGTAGTCACC GTGGCGAACG AGCTCCAGGC GCAAGCCGTG CTCCACGCAC ACCTCGTGAA
GACTAA
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| Protein sequence | MSETITEFRQ LALEETLLSA LDEMGFVAPT PIQAESIPLL LAGRDALGKA QTGTGKTAAF
SLPLLNKINL KQHNPQAIIM APTRELAIQV AAEVKNLGRN IKGLKVLEIY GGASIVDQMR
ALSRGAHIVV GTPGRVKDLL NRDRLNLGEV HTFILDEADE MLKMGFVDDV TWILEKAPET
AQRILFSATM PPMVKTIVDR YLRDPARVDV AGTNNTVEQV TQNFWIVKGV EKDEAMSRLL
ETEEIDASIV FVRTRQDTER LADWLSARGF KAAALHGDIP QSLRERTVDH IKRGVIDILV
ATDVVARGLD VPRITHVFNY DIPFDVESYI HRIGRTGRAG RKGKAILLVR TNQIRMLRTI
ERVTKSSMVE IELPHRDQVA EARLAVLGAE LAADKEFVAL EAFSDLITKL QETLEVDAST
IAAMLLKRQQ GKRPLFYKGP DPMIAAVERS KNRRPERGDR GDRPERGDRP ERGDRPDRGE
RRQYNNDDFD TYQLEVGRDQ GVQVKDIVGA LANELGFTKG AIGAIKLAPG HTYVQLPKKM
SSDVASKLKQ LRIRQNEVKA VVVEGVDLTI DRRPRTGGGA GDSAGAGAGR GGYRGNREGG
AGAARGGERR FDRNKGGDHR GSHRGERAPG ASRAPRTPRE D
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