Gene VSAL_II0438 details

Gene Information

• Locus tag: VSAL_II0438
• Symbol: rnb
• ID: 6961872
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: -
• Start bp: 494598
• End bp: 496613
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643381732
• Product: exoribonuclease II
• Protein accession: YP_002264772
• Protein GI: 209809234
• COG category: [K] Transcription
• COG ID: [COG4776] Exoribonuclease II
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02062] exoribonuclease II

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCAAG ATAACCCATT ACTTGCGCAA TTGAAGCAGC AAATACAAGA AAAATTGCCT 
AAAAAAGAAG GCACAATTAA AGCAACCGAC CGTGGTTTTG GCTTCTTAGA ATCAGATGAC 
AAGAAAAAAA GCGTCTTTAT TCCACCAGCA CAAATGAAAA AAGTGATGCA TGGTGACAGA 
GTCATTGCTC TTATTCGTAC TGAAAATGAC AAAGACCAAG CAGAACCAGA TCAACTTGTT 
GAACAATCAG TTACTCGATT TATTGGCCGC ATTCAGATGT TTAAAAAACG TCTACAGGTA 
ATGCCTGATC ACCCTAGCCT AAAAAATGCA ATAAAAGCAA AAACACGTAA AGGTGTAAAT 
CCAGAAACCT TAAACGAAGG TGATTGGGTT GTTGCTGAGT TAACACAGCA CCCATTAAAA 
GGAGATGACG GCTTTCTATG TGACATCACC CATAAGATCA CTGACACCGA TGACAAAATC 
GCGCCTTGGT GGGTAACTCT TGCTCAAAAT GATTTACCAA ATTCAGAACC TAAAGGCATT 
GAACATTGGG AAATTAAAGA CGACGCTGAT TTAGTTCGTG TCGATATGAC CGAAACACCA 
TTTGTAACCA TTGATGGTTC ATCAACCAAA GACATGGATG ATGCCCTTTA TATTAAGAAA 
CAAGACAACG GTTCTTTTGA ACTGACTATT GCGATTGCCG ATCCTACCGC TTATATCACT 
CCAGATGATG AGATGGATAA AGTGGCACGT CAGCGTGGTT ATACTATTTA TCTTCCTGGT 
CGCAATATAC CAATGCTACC AAGAGATCTA AGTGATGAGT TATGTTCATT AATCGAAAAT 
GAACAACGCC CTGCGATTTG TTGTACCGTG ATTGTTGATG CAGAAGGCAC CATTCAAGAA 
TACACCATTA ACTTCTACGC CGCGACGATT AAATCTCACG CACGCTTGTC TTACGATAAT 
GTGTCTGATT TCCTTGAAAC AGGCCATTGT GAAACTTGGG CACCAAGTGA AATCATCGCT 
CAAGTAGTTA CTGAACTGCA TGAATTTGCA CAAGCTCGTA CTACATGGCG TCAAACGCAT 
GCTGTTATCT TTCCTGATCG CCCAGATTAT CGCTTTGAAT TAAGTGAAGA CAATGATGTT 
GTTGCGATTC ATGCCGATAC GCGTCGCTGC GCGAATAAGC TAGTAGAAGA AGCAATGGTT 
ACTGCGAACA TCTGTGCAGG TAAAACATTA CGTAATACCT TTAACATGGG CGTATTTAAC 
TCACATGCTG GTATTAAACT CGATAAGTTT AAAGACGTTG TTGAGATTGT AAACCAATTA 
GAAGGCGTTG AATTTACTGA AGAGCAAATA GCAACACTGG AAGGTTTCAG TGAACTACGC 
CGTCTTTTAG GTAGCCAACC GACGTCTTAC CTTGATGCAC GTATTCGTAA ATACCAAACT 
TACAGCGAGA CGGGTAACGA ACCCCTTCCT CATTATGCAA TGGGTCTTGA TATCTACGCG 
ACGTGGACAT CACCAATTCG TAAATACAGC GATATGATTA ACCATCGCAT GCTTAAGGCT 
CATATCTTAG GAAAAGAACC CGTACAGCGC CCTGATGATA TCGTCGGTGA AGAATTGGCC 
CTAAGCCGTC GTTACCATCG AATGGCTGAA CGTAATGTGA GTGATTGGCT ATATTGCCGA 
ACATTGGCAT GTGAAGTTGA AAAAGAGACG CAGTATACGG CTGAAATTTT TGATATTAAT 
CGTGCAGGTA TGCGTGTTCG TTTAATTGAA AATGGTGCCG CCGCTTTCAT TCCCGGTTCG 
TTAATTGTTG ATAACAAAGA ACGCATTGAA TGTAATGGCG ATCAAGGAAC GGTTTCAATC 
GATAAACATG AAACCTTTAA GCTTGGTGAT CAACTTCAAG TTACCTTAGC TGAAGTAAAA 
GAAGAGACTC GTAATATAGT TGCAAAACCA GTGCAAGCCT TCCCTGCTCC TGTTGTTGAA 
GAAACAGAAA TAGAAACAGA AAATCCTAGC GCTTAA 

 

Protein sequence

MFQDNPLLAQ LKQQIQEKLP KKEGTIKATD RGFGFLESDD KKKSVFIPPA QMKKVMHGDR 
VIALIRTEND KDQAEPDQLV EQSVTRFIGR IQMFKKRLQV MPDHPSLKNA IKAKTRKGVN 
PETLNEGDWV VAELTQHPLK GDDGFLCDIT HKITDTDDKI APWWVTLAQN DLPNSEPKGI 
EHWEIKDDAD LVRVDMTETP FVTIDGSSTK DMDDALYIKK QDNGSFELTI AIADPTAYIT 
PDDEMDKVAR QRGYTIYLPG RNIPMLPRDL SDELCSLIEN EQRPAICCTV IVDAEGTIQE 
YTINFYAATI KSHARLSYDN VSDFLETGHC ETWAPSEIIA QVVTELHEFA QARTTWRQTH 
AVIFPDRPDY RFELSEDNDV VAIHADTRRC ANKLVEEAMV TANICAGKTL RNTFNMGVFN 
SHAGIKLDKF KDVVEIVNQL EGVEFTEEQI ATLEGFSELR RLLGSQPTSY LDARIRKYQT 
YSETGNEPLP HYAMGLDIYA TWTSPIRKYS DMINHRMLKA HILGKEPVQR PDDIVGEELA 
LSRRYHRMAE RNVSDWLYCR TLACEVEKET QYTAEIFDIN RAGMRVRLIE NGAAAFIPGS 
LIVDNKERIE CNGDQGTVSI DKHETFKLGD QLQVTLAEVK EETRNIVAKP VQAFPAPVVE 
ETEIETENPS A