| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0436 |
|---|
| Symbol | |
|---|
| ID | 6961870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 492788 |
|---|
| End bp | 494020 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643381730 |
|---|
| Product | membrane associated GGDEF protein |
|---|
| Protein accession | YP_002264770 |
|---|
| Protein GI | 209809232 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCTA GCCTTCTGAG TCACCCTTTG TTTAAGTTAC TTTTACCTAT AATTTTGGTC
GTTTCTGCGA TTACAGGAAT GAGTGGTATC ATTCAACTTT CAGCTGAAAA CAAAGGCTTC
TCATACATAT TGCCATACAT TGTATTATCA ATTGTATTGC TTTTAAGCCA ACCATTTAAC
CAAGGTCGAA TTGGAATGAT TGCCATCAGT ATGGCGATGG CTTATTGGAT CATCCAAGAA
AGACTGCAAG TACCTTTATC TTTTGGTACG ACTCGTATTG AATTTACGCT AACCGCCTTT
CTTTTACCGA TTACAATGAT GGCGACGTTC ATTTTTCCTG AGCGTAGAAT TTTCTCAAAA
TATGGTGCAG GTTACCTATC TGTTCTTTTA TTCATGTTCA TTTGGTGTTG GATCATCGTG
ACGCATTTCT CAGAAAATGA CATGACGGAG ATTTGGGAAA CCTACCTACT CAACATCCCT
GAAATATCAC CACTTCCTAT TATCATCGTA CTTTATAGCT TAGTGATGTG TGGCCTTTCT
GCTATTTTTG TTTTGACTCG CAGTAACAAT ACCGATCTCG CGTCATACAC TTGCTTACTT
TACTCTTCGT TAACTTTTTC ACTATTTAGC GTTGACTTTA TTTCTAGCAC GATGTTCTCT
ATCGCTGGTC TACTTCTTCT TTTATACATT ATTTCAGCGA GCCACGAACT TGCCTTTATT
GATCAACTTA CCAGTATTCC TGGGCGTCGC GCCTTAGAAT CTGAAATGAA GCATCTTGGT
CGACGTTATA CCATTGCTAT GTTAGATATT GACCATTTTA AAAAATTCAA TGACAACTAC
GGACATGACA CAGGCGATGA TGTACTTAAA CTGGTTGCCA GTATTATGGC TCAAACAGGG
GGTAATGCTA AAGTATATCG CTATGGTGGT GAAGAGTTTA CCGTTCTATT TAAAGGTAAG
ACCGTAGAGG AGAGCCTTGA ATACCTTGAA GAATTACGTG AAGATATTGC CGATTACGAT
TTAATTATTC GAGACACGTC AACTCGACCT AAAGATAAAA AAGAAGGTCA AGCGAAACGT
GGGAAAGCCA ATAAAACCAA AGTAGTCAAC GTGACGATTA GTATTGGTGT TGCCGACAAT
ACCGAATATA AAAAACCTCA AGAAGTCATA AAAGCATCAG ATAAGGCTCT TTATCGTGCT
AAAGATGGTG GCCGAAACTG CGTTAGTTTA TAG
|
|---|
| Protein sequence | MSSSLLSHPL FKLLLPIILV VSAITGMSGI IQLSAENKGF SYILPYIVLS IVLLLSQPFN
QGRIGMIAIS MAMAYWIIQE RLQVPLSFGT TRIEFTLTAF LLPITMMATF IFPERRIFSK
YGAGYLSVLL FMFIWCWIIV THFSENDMTE IWETYLLNIP EISPLPIIIV LYSLVMCGLS
AIFVLTRSNN TDLASYTCLL YSSLTFSLFS VDFISSTMFS IAGLLLLLYI ISASHELAFI
DQLTSIPGRR ALESEMKHLG RRYTIAMLDI DHFKKFNDNY GHDTGDDVLK LVASIMAQTG
GNAKVYRYGG EEFTVLFKGK TVEESLEYLE ELREDIADYD LIIRDTSTRP KDKKEGQAKR
GKANKTKVVN VTISIGVADN TEYKKPQEVI KASDKALYRA KDGGRNCVSL
|
|---|
| |