| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0426 |
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| Symbol | |
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| ID | 6961861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | - |
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| Start bp | 478201 |
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| End bp | 479442 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 643381719 |
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| Product | putative GGDEF protein |
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| Protein accession | YP_002264761 |
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| Protein GI | 209809223 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.631508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCCA TAGTTATCGA TTCAACTTAT GGCATTGTTA TACATCGTAA TTTTATTCCT
TTGTTTGCTG ATGAAAAATA TGCACAGACA TTTGGATTTG AATCGGTTAA CGATGTAATG
AATCTCAGTT CATTATTTGA AATTATTGAT CCTAAGTTCC ATGAACTCGC GCAACAGTCT
TACAACGATG TCATGTCCGA AAAAGACCAA CCAAAGGTTC GTTCATACGT CAACCAAGAT
ACTAATGGTC GCATTTTCTC AGTTCTAACT GTTGATCATA TTGTGGAGTG GGAAGGAGAG
CCTGCACTAC AAATTACGGT TATTGATATG TCAGCCATTG ATGAAACCAA TCATAAGATT
TTAGAACAAG AACAAAAATA CAAAGACTTA ATATGGAATT CCTTACAGGG TATTGTTGTT
CATCGCCACT TCAAGCCGCT TATGGTTAAC CCCGCATTTG TCCGTATTAT TGGTGCTAAA
TCTGTTGCCG AAGTCATGGC GATGGAGTCT TTTAAATTCA TCATTCCTGA ATATAATCAG
GAACATGCAT CTAATTTACA CTATCAATTG ATTTCTGGTG ACATTGAAAA TACAAACTCA
GTTGTTGAAA ACATACGACT TGATGGTGAG TCTCGATTTT TTCAGTTATT TGAAAGTGTT
ATTGATTGGG ATGGAGAACT TGCCGTTCAG AGCTCTATTA TCGACGTTAC AGAAAAATAC
CATTTAGAAC GTAAAATTGA ATTTCAAGCC AAACACGATG ACTTAACTGG ATTATTAAAT
CGCAGAGCAA TAACTGAATT TTTATTAAAA GAACAAGAAG AGCATTTACG CCCCTCTCAG
ACTTGTTTAT TAATTGATAT CGATAACTTT AAATTAATTA ATGATCAATT TGGCCACAGT
GCTGGTGACA GTGTTATCCA ACAATTTGCA GAGCTGTGTT CAACGTTCGT CAAAGATAAT
GGTGTTATCG GCCGATGGGG AGGTGAAGAG TTTATTATTT TCTTCCCGCA ACTCAATGTA
GAGCAGGCAA ATAATATTGC AGAAAAAATC AGATATGCCT GTGAAGAAGT GCATTTTATA
TTTAATGACA TTCAACATTC AATTACGGTA AGTATTGGTA TCAGCACCTG CCTTTCAACT
TCATGCAGTA TTGAAGCTTT AGTTCAAAAC GCTGATAACA ATATGTATCA AGCTAAACAA
CAGGGAAAAA ACCAAATTGT CTTACCAAAA CGGTTAAGCT AA
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| Protein sequence | MKSIVIDSTY GIVIHRNFIP LFADEKYAQT FGFESVNDVM NLSSLFEIID PKFHELAQQS
YNDVMSEKDQ PKVRSYVNQD TNGRIFSVLT VDHIVEWEGE PALQITVIDM SAIDETNHKI
LEQEQKYKDL IWNSLQGIVV HRHFKPLMVN PAFVRIIGAK SVAEVMAMES FKFIIPEYNQ
EHASNLHYQL ISGDIENTNS VVENIRLDGE SRFFQLFESV IDWDGELAVQ SSIIDVTEKY
HLERKIEFQA KHDDLTGLLN RRAITEFLLK EQEEHLRPSQ TCLLIDIDNF KLINDQFGHS
AGDSVIQQFA ELCSTFVKDN GVIGRWGGEE FIIFFPQLNV EQANNIAEKI RYACEEVHFI
FNDIQHSITV SIGISTCLST SCSIEALVQN ADNNMYQAKQ QGKNQIVLPK RLS
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