| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0405 |
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| Symbol | |
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| ID | 6961841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 455580 |
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| End bp | 457094 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643381700 |
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| Product | putative HTH-type transcriptional regulator |
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| Protein accession | YP_002264742 |
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| Protein GI | 209809204 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0652706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCAGT CAAAAAGCTT AATTCGACAA AGTCATTTTC TTGGAACTAA AATTCGTAAT
CTGAGAAAAC GCAATCATTT AACGATGGAA GATCTTTCAA CTCGTTGTGT AAGAGTTGAT
CCTGAGAACT CCCCATCAGT GTCTTATCTT TCAATGATAG AGAGAGGAAA GCGTGTTCCC
AGTGCAGATA TGCTGGAAGT TATTGCTACT GTTTTTCAAA AAGAGTCTTC ATGGTTTTTA
GACAATGAGC CAGAAGCTCA AGCCATTACG CCAGATAAGG GAAGGAAAGG GGGAATCAGT
GGCATGGTGT TAGAACCAAG TTTTTTATTC TCTAATGATA TTCTTCAAAT CGCGATCCCT
GAAATGCTAA ATCAAACCGG TGTCACTGGG CGACAGTTTG CTCATCTTCT GATCCGAGCT
CATCAAGAGA ACAATCAAAA TCACTTTCCT GATTTAGAAC GAGCAGCCGA AGAGGTTGGA
CTAAAACAGC TACCTTTGAG TGTTGAACAA ATGATGGCGA TGGCGGTTTT TCATGGTTTA
ACGCTTAAAT GGGTTCAAGA AACACCGACG TCTGTTGTTG ACGAATTTGG TGTGAATGGA
AAAGAGTTAC TCACTTCATT TTTTGAACCA CCTTGCACCG TTTACTTAAA TGAGATATTG
AAGCAGTATC CAACACGATT GAAATATGAT CTTGCTGTTT ATATTGGGCA CTGTGTATTA
CACAATAAAG AAGGGTTAAA GAGTTCGCTG TCGGTAGGAA GCCATCGTGT GTTTGATAAT
GAGGTCCACC ATACTGACAG TGCATTGAAT GCGCAGGATA TTTTGCATGC GTGGCGTGAT
TTTGAATCCA GTTTTTTTGC AGGGGCATTA TTGTGCCCAA GAGTGCCATT TAGACAATTG
TTAGATAGAC ACGGCTATGA GATTGAGGCG CATCAAATTG CCGGAGTTTC TCCATCCGTC
GCGATGCGAA GAATGACAGT AGTTTCTCCT TATCCTCATT GGCATTACTT TGATGCGTAT
GCCCCCGGTA AATTAAAAGC CGTGTACCGA GGCAACGGAA TTCCATTGCC TTGGGGAAAC
ATGACTCAAG TGAATGATCC TTGTCATCAT TGGGCGGTGT TCCGTCGATT ATCAGAATCG
AAAGCGGGAA GTTCTGCTCA AATATCAATC TTGAATGTGG ATAATGAACC GAGAATTTAT
TGTTGTGAAT CAGTTAATAT GACCGATCCT GCTGGCAATG ATCGTGTGTT ATGTGCGGGT
ATTGATTTGA ACCCTGCGAT TGAAGCTCAA GGTAAAGATG CGGTTTCGTT AGCTCGGGAT
TTGCAAAAGT TATGCGTTAA AAATGGCGGT GAAAGTCCTA TATCTAAAAA TATTAAAAGA
GAATTGATTA GCGTGGCTAA AATATTGAAT ATTAATTGGA TAGAAAGAGG ACTTGAAACT
GACGCTCGCG TTATTTGTTC TCGTGGCGCA GTGTGCCCAA GAAAACCAAG TTGTTACTCA
GAGTGTAAAG AATAA
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| Protein sequence | MRQSKSLIRQ SHFLGTKIRN LRKRNHLTME DLSTRCVRVD PENSPSVSYL SMIERGKRVP
SADMLEVIAT VFQKESSWFL DNEPEAQAIT PDKGRKGGIS GMVLEPSFLF SNDILQIAIP
EMLNQTGVTG RQFAHLLIRA HQENNQNHFP DLERAAEEVG LKQLPLSVEQ MMAMAVFHGL
TLKWVQETPT SVVDEFGVNG KELLTSFFEP PCTVYLNEIL KQYPTRLKYD LAVYIGHCVL
HNKEGLKSSL SVGSHRVFDN EVHHTDSALN AQDILHAWRD FESSFFAGAL LCPRVPFRQL
LDRHGYEIEA HQIAGVSPSV AMRRMTVVSP YPHWHYFDAY APGKLKAVYR GNGIPLPWGN
MTQVNDPCHH WAVFRRLSES KAGSSAQISI LNVDNEPRIY CCESVNMTDP AGNDRVLCAG
IDLNPAIEAQ GKDAVSLARD LQKLCVKNGG ESPISKNIKR ELISVAKILN INWIERGLET
DARVICSRGA VCPRKPSCYS ECKE
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