| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0398 |
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| Symbol | |
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| ID | 6962471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 445302 |
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| End bp | 449459 |
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| Gene Length | 4158 bp |
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| Protein Length | 1385 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643381693 |
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| Product | NAD-dependent formate dehydrogenase alpha subunit |
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| Protein accession | YP_002264735 |
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| Protein GI | 209809197 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAAA TAACTATAGA TAAACAAACA TTCACTATCG ATGAAGAGAT AACACTGTTA
GCTGCTGCAA AGGAATGCAA TATTGAAATC CCTTCACTGT GCGGAAACAA CATCAATGGT
GAAAAATTGC CATGTGATTT GTGTGTAGTA GAAATTGAAG GGCAAGGAGT TCAGCGTGCT
TGTGAAACTC AAGTCGTTGA TGGAATGCAA GTGATCACTT CGTCTGAAGT ATTAGCAAAA
CGTCGTCAAA GTGCATTAAA TAAAATACTT TCTGATCATT ACGCAGATTG CGAAGCACCG
TGCCAAACTG CGTGTCCTGC TGGCGTGGAT ATACAGTCAT ATCTGTATTA TATTTCACAG
AATGATCATC AAAAAGCCAT TGAAGTCATT AAACGAACAT TACCAATGCC ATTATCGATT
GGTCGTGTGT GTCCTGCTTT CTGTGAAACA GAGTGTCGTC GTGGTTTAGT TGATGAACCA
TTGGCTATCC GTCAATTAAA ACGTCACGCG GCTGATGCCG ATTTACACGC TCAAGAATCA
TACGTACCAC CAAAAAAAGC AGACAAGGGT AAATCGATTG CTGTTATTGG TAGTGGGCCG
GGTGGATTAA CCTGTGGTTA TTACCTAACC AATGAGGGTT ACAACGTCAC GGTGTTTGAT
TCGATGCCTA AAGCAGGTGG TTGGTTACGC TATGGTATCC CTGAGTACCG TTTACCAAAA
TCGATTTTAG ACAAAGAAAT TGAGTTGATG TGCCGCAACG GCATGGAGAT CAAAACCTCG
GTTAAATTAG GTGAAGATTT CTTATTATCA CAGTTAAGCG ATGATTATGA TGCGGTGTGT
TTGGCTGTTG GTGCGTCTAA AGCGGTAGAA ATGCAGTATG AAGGCAGTGA GCTTGGTGGT
TGTTATTTAG GTGTCGATTA CCTAAAAGAT TACGTAATGG AATCCAAATT GATTACGGGT
AAAAAAGTGG CCGTGATTGG TGGTGGTAAT ACCGCGATTG ATTGTGCTCG TACTGCCGTG
CGTGATGGTG CTGATACCAC GCTTATTTAT CGTCGTACTC GTGCAGACAT GCCAGCCGAA
GACTATGAAG TGGTTGAGGC TGAACATGAA GGCGTTAAAT TCCATTTCTT AACCAATCCT
GTTGAGAACA TTGCAGATTC AAAAGGTCGT GTTACCCAAG TTCGCTTAGA GAAAATGGCA
TTGGGCGAAC CTGATGCATC AGGCCGACGA AGCCCTAAAG CGACAGGTGA ATTCTTCATT
GAAGATTTTG ATACTGTAAT TTCAGCCGTA TCTCAAAAAC CAGATTTAAG CTTTTTAGAA
AACGATAATA TTGATTTACC GTTAACACGT TGGAACACGG CTGACTCTAA TAGCTTAACC
ATGCACAGTG GTGTGAAAAA CATCTTTAGC ATTGGTGATT TTCGTCGTGG CCCTGCAACA
GCGATTGAAG CCGTTGCTGA TGGTCGTATT GCCGCAGAAG CGATTGATCG TTTCTTTAAA
GGCGATATGG AAAAGATTCC GACTAAGTTG TTTAATTCTC AAAAAGAGAA GAAGACCAAG
CAGGTTGATC CTACATATTT TGAGCACATC CAAAAAGCGA TGCGCGTTAT CATGCCTGAA
TTAACGGCAG AGCAGCGTGA GCAAAGTTTT GAAGAAGTCG AAACAGGCTT TGATAATGCG
GATGCGATTC GTGAAGCAGA GCGTTGCTTA GAGTGTGCGT GTCAGGCGAA TACTGATTGT
GGCTTGCGTG ATTACGCGAC GGAATACAAA GCCGATGAAA CCGATTTAAG TAACGAAAGT
AAGCAGAAAT TTGCGATTGA TACTAGCTCT GAGTTCATTG TGTTTGATGC CAACCGTTGT
ATCAGCTGTG GTCAATGCGT AGAAGCGTGT AACGAAAAAG GCGTACATGG TGTATTGAGT
TTCATGAAAA ATGAAGACGG TACCAATGCC TCTCGCCCTG AATGTCGTGC TGGTTTCGAG
CATGGTTATG ACATGGGTAA CTCCAATTGT GTGCAATGTG GTGCGTGTAT TCAAGCGTGT
CCTGTTGGTG CATTGGTTGA TGCACGTGAT AAATCACAAG GTCGAATTGA GTTATTAAAA
CCGGTCGATA CCATTTGTAC GTATTGTGGT GTCGGCTGTA AGTTGACAAT GTTAGTGGAT
GAATCGAAAA ACAAAATTAA GTACATACAA GGTGCGAAAG GCTCTCCAGT TAATGAAGGC
ATGTTATGTG TGAAAGGACG TTTTGGTTTT GATTTCGTTG GTAGTGATCA ACGTTTAACA
ACACCATTAA TTCGTAAACA TGGTGAATTA GTACCAGCAA GTTGGGAAGA GGCAATAACG
CTTGTTGCTG ACAAGTTTAG TGCAATTAAA ACGCAATATG GCGGAAATGC ATTAGCGGGA
TTCTCTTCTG CAAAAACCAC CAATGAAGAT AACTACGCCT TCCAAAAATT GGTTCGTTGT
GAGTTTGAAA CCAATAACCT CGATCATTGT GCGCGTCTTT GTCACTCAAC GACAGTGACT
GGCCTTGAAG CCTCGATTGG CAGTGGGGCA ATGACCAATG ATATTCCAAG TATTAAGTAT
TCAGATCTTA TCTTTATTAT TGGGTCAGAC ACTACATCTG CTCACCCGAT CATTGCTTCG
CATATCAAGC AAGCTATTCG TCATCACGGT GCGCGTTTGG TTGTGGCGGA TCCTAAGCAA
GTGGATATCT CGGATCATGC TGAACTGTAT GTAGCGCAGC GTCCGGGGAC GGATGTGATG
TTACTTAACG GGATCATGCA GCAGATTATT AAGAATAACT GGCATGATCA AGCGTACATA
ACAGAACGGG TTGAAGGCTT TGAAGAGCTG AAAGCAGAAG TCATGTCAGA GACGTATTCG
CCTGAGAAAA TTGAATTAAT TACGGGCGTG AAAGCGCACG ATGTGATTGA AATGGCGCGT
TATATCGGTA CCGCCGAGCG TACCGCCATT TACTATTCAA TGGGTATTAC GCAGCACACG
ACAGGGCATG ATAATGTTCG CTCTATTGCT AACTTGCAAA TGCTGTGTGG CAACATTGGT
ATTGAAGGTG GTGGTATTAA CCCGCTTCGA GGCCAATCAA ACGTGCAAGG TGCATGTGAT
ATGGGCGCGT TGCCAACGGA TTTTCCTGGT TATCAAAAAG TGGAAAATCC AGCGGTATAC
GAGAAGTTTG TTAAAGCATG GAACAAGCCA AACCTACCAG ATAAGAAAGG CTTAACGTTA
ACAGAAATCA TTGATGCAGC ATGCCATAAG CAAGTGAAAG GTTTGTTCAT TATGGGTGAA
AATCCAGTAT TGAGTGATCC TGACCAAGCG CACGTTATTC ACGGTTTAGA GACGTTAGAT
TTCTTAGTGG TACAAGATAT CTTCATGACA GAAACCGCCG CATACGCAGA CGTGATCTTG
CCTTCGTGTT CGTTTGCAGA AAAAGCCGGT CACTTTACCA ATACAGAGCG TCGTGTTCAG
CGTATTTCTC CGGCAGTTAA TCCTCCGGGT GAAGCGAAAG AAGACTGGTG GATCATTCAA
GAAATTGCGA AAGCGATGGG CGGAGATTGG AGCTATCAAT CGGTTGAGGA GATCACCGAA
GAGATCACTC AGGTTACGCC GCAGTATCAA GGCATGCATT GGGATGCTAT TGGTAAAAAT
GGACTTCAAT GGCCATGTAA TGATGCGAAT CCAGAAGGGA CTCGTATTAT GCATAGCGAT
CAATTCATTC GTGGAAAAGG TCAGATGGCC GCTGTGCCAT TCCGATACGC CGCAGAACTG
CCTGATGAAG AGTATCCATT AGTCCTTACA ACGGGTCGCT TATTAGAGCA ATATCATACC
GGCACTATGA CTCGTAAAAC CAAAGGGTTG AACAACCTTG CAGGGCCGCG AGCTATGATC
AGTGTGGCAG ATGCTGAGCG TCTTGGTATC TCAAACAGTG AAATGGTTAG AGTCTCGACT
CGTCGTGGCA CCATTGAGGC TCCTGCATTT GTGACTAAGC GTATGCAAGA AGGGGTGGTG
TTTGTTCCGT TCCACTTTGT TGAAGCGGCT GCGAATAAAT TAACCACAAC AGCGTTAGAT
CCTCATGCGA AGATCCCTGA GTTTAAAGTC GCGGCAGTGA AGGTTGAGAA AATCGTAGTA
CCAGAAATGT GTGAATAA
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| Protein sequence | MMKITIDKQT FTIDEEITLL AAAKECNIEI PSLCGNNING EKLPCDLCVV EIEGQGVQRA
CETQVVDGMQ VITSSEVLAK RRQSALNKIL SDHYADCEAP CQTACPAGVD IQSYLYYISQ
NDHQKAIEVI KRTLPMPLSI GRVCPAFCET ECRRGLVDEP LAIRQLKRHA ADADLHAQES
YVPPKKADKG KSIAVIGSGP GGLTCGYYLT NEGYNVTVFD SMPKAGGWLR YGIPEYRLPK
SILDKEIELM CRNGMEIKTS VKLGEDFLLS QLSDDYDAVC LAVGASKAVE MQYEGSELGG
CYLGVDYLKD YVMESKLITG KKVAVIGGGN TAIDCARTAV RDGADTTLIY RRTRADMPAE
DYEVVEAEHE GVKFHFLTNP VENIADSKGR VTQVRLEKMA LGEPDASGRR SPKATGEFFI
EDFDTVISAV SQKPDLSFLE NDNIDLPLTR WNTADSNSLT MHSGVKNIFS IGDFRRGPAT
AIEAVADGRI AAEAIDRFFK GDMEKIPTKL FNSQKEKKTK QVDPTYFEHI QKAMRVIMPE
LTAEQREQSF EEVETGFDNA DAIREAERCL ECACQANTDC GLRDYATEYK ADETDLSNES
KQKFAIDTSS EFIVFDANRC ISCGQCVEAC NEKGVHGVLS FMKNEDGTNA SRPECRAGFE
HGYDMGNSNC VQCGACIQAC PVGALVDARD KSQGRIELLK PVDTICTYCG VGCKLTMLVD
ESKNKIKYIQ GAKGSPVNEG MLCVKGRFGF DFVGSDQRLT TPLIRKHGEL VPASWEEAIT
LVADKFSAIK TQYGGNALAG FSSAKTTNED NYAFQKLVRC EFETNNLDHC ARLCHSTTVT
GLEASIGSGA MTNDIPSIKY SDLIFIIGSD TTSAHPIIAS HIKQAIRHHG ARLVVADPKQ
VDISDHAELY VAQRPGTDVM LLNGIMQQII KNNWHDQAYI TERVEGFEEL KAEVMSETYS
PEKIELITGV KAHDVIEMAR YIGTAERTAI YYSMGITQHT TGHDNVRSIA NLQMLCGNIG
IEGGGINPLR GQSNVQGACD MGALPTDFPG YQKVENPAVY EKFVKAWNKP NLPDKKGLTL
TEIIDAACHK QVKGLFIMGE NPVLSDPDQA HVIHGLETLD FLVVQDIFMT ETAAYADVIL
PSCSFAEKAG HFTNTERRVQ RISPAVNPPG EAKEDWWIIQ EIAKAMGGDW SYQSVEEITE
EITQVTPQYQ GMHWDAIGKN GLQWPCNDAN PEGTRIMHSD QFIRGKGQMA AVPFRYAAEL
PDEEYPLVLT TGRLLEQYHT GTMTRKTKGL NNLAGPRAMI SVADAERLGI SNSEMVRVST
RRGTIEAPAF VTKRMQEGVV FVPFHFVEAA ANKLTTTALD PHAKIPEFKV AAVKVEKIVV
PEMCE
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