| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0397 |
|---|
| Symbol | glpA |
|---|
| ID | 6962472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 443325 |
|---|
| End bp | 445007 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643381692 |
|---|
| Product | sn-glycerol-3-phosphate dehydrogenase subunit A |
|---|
| Protein accession | YP_002264734 |
|---|
| Protein GI | 209809196 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03377] glycerol-3-phosphate dehydrogenase, anaerobic, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAA CTTCTCGATT AGAAACCTCT GTTATTATCA TTGGAGGCGG CGCTACAGGC
ACAGGAATCA TGCGTGATTG TGCATTGCGT GGGATCAATT GTATTTTGAT TGAGAAAGAC
GATTTGGCCT CAGGAACCAC TGGTCGAAAT CATGGTTTAC TGCACTCAGG CGCTCGCTAT
GCCGTCACCG ACCCTGAATC AGCCAAAGAA TGTATCCATG AGAATAAAAT CCTTAAAAGC
ATCGCAAAAC ATTGCGTTGA AGATACCCAA GGCTTGTTTA TTTCACTGCC TGACGACGAT
TTAAATTTCC AAGCGCAATT TATTGAATCA TGTAAAACCG CAGGCATTGA CGCCAAGCAA
CTAACCCCCA AAGAAGCCCT ATTATTAGAA CCTAATGTAA ACCCTAATCT TATTGGTGCG
GTTCAAGTGC CAGATGGAAC GCTCGACCCT TTTCGTTTAT GTGCCGCAAA TGTGCTTGAT
GCGAAAGAAA ATGGCGCGCG TTTGCTCACA CACACACACG TAACTTCACT TATTCGCCAT
CAAGATACGG TACTTGGTGT GAATTGTATT GATGTTCGTA CCAATCAAAA GATTGAGATT
TTCGCTCAAG AAGTCATTAA TGCGGCAGGG ATCTGGGGAC AAAATATTTG TGAATACGCT
GATTTAAGCA TCAAGATGTT CCCAGCCAAA GGTTCTCTGC TTATCTTAGA TTATCGTATT
AATAATTTGG TAATCAACCG TTGCCGTAAG CCATCAGATG CTGACATTTT AGTTCCCGGT
GACACAATTT CACTGATAGG AACCACCTCT GAGCACATTG ACTACGATAA AATTGATGAC
TTACATGTCA CAGCTAAAGA AGTGGATATT TTACTGAGTG AAGGCGCTAA GTTAGCCCCA
ATAATGGCGA ATACTCGTGT ACTTCGTGCT TATGCAGGTG TTCGTCCGTT GGTCGCTGTT
GATGATGATG GTTCAGGTCG AAATATCAGT CGTGGCATTG TGTTGCTTGA TCACGCAGAA
AAAGACGGGC TCAACGGCTT TACGACGATT ACGGGAGGTA AATTAATGAC CTCTCGACTC
ATGGCTGAAA TGACCACCGA CATGATCGCT AAAAAACTGG GAAACAACCA AGAGTGTACG
ACTCACTTAC GATCGCTTCC TGGATCGAAC GGTGCCTCTA TTGCCGCCAA GAAAACAGCG
AGCCTTGCAA AACCCGTTTA TCAAAGTGCT ATTTATCGTC ATGGTGAACG AGCTGATCAA
TTCTTAACGG ATGATGCAAA AGATCAAGCC GTGATCTGTG AGTGCGAAAT GGTGACTCAA
GGTGAAATCA ATTACGCCAT TAAACAATTA GACGTGCATA ACTTAGTGGA TTTACGCCGT
AGAACACGGT TAGGAATGGG ACCGTGCCAA GGTGAACTCT GCACCTACCG CGCGGCAGGA
TTATTTGAAG AATATGGTCA AGTCAGCGGT AATCAATCAA GCCAATTATT AAGTCACTTT
TTAGAAGAGC GTTGGAAAGG CATTAAACCC GTATTTTGGG GCGATGCTCT GCGCGAGGCC
GAATTCAGTT ACTGGATTTA TGAAGGATTA TTCGGTGCCA GTGACATACC AACACTCTCT
ACAAAAACGG AACAAAGCAC TTCGTCTCAA CCAAAACAAG AACAACAAGA GGCCACATTA
TGA
|
|---|
| Protein sequence | MDKTSRLETS VIIIGGGATG TGIMRDCALR GINCILIEKD DLASGTTGRN HGLLHSGARY
AVTDPESAKE CIHENKILKS IAKHCVEDTQ GLFISLPDDD LNFQAQFIES CKTAGIDAKQ
LTPKEALLLE PNVNPNLIGA VQVPDGTLDP FRLCAANVLD AKENGARLLT HTHVTSLIRH
QDTVLGVNCI DVRTNQKIEI FAQEVINAAG IWGQNICEYA DLSIKMFPAK GSLLILDYRI
NNLVINRCRK PSDADILVPG DTISLIGTTS EHIDYDKIDD LHVTAKEVDI LLSEGAKLAP
IMANTRVLRA YAGVRPLVAV DDDGSGRNIS RGIVLLDHAE KDGLNGFTTI TGGKLMTSRL
MAEMTTDMIA KKLGNNQECT THLRSLPGSN GASIAAKKTA SLAKPVYQSA IYRHGERADQ
FLTDDAKDQA VICECEMVTQ GEINYAIKQL DVHNLVDLRR RTRLGMGPCQ GELCTYRAAG
LFEEYGQVSG NQSSQLLSHF LEERWKGIKP VFWGDALREA EFSYWIYEGL FGASDIPTLS
TKTEQSTSSQ PKQEQQEATL
|
|---|
| |