| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0374 |
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| Symbol | tadC |
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| ID | 6962591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 416212 |
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| End bp | 417090 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643381671 |
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| Product | type II secretion system protein F |
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| Protein accession | YP_002264713 |
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| Protein GI | 209809175 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.249846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAACGT CATCCGTTGT ATTGTATGCA GTCTTAGTTT CTTTTGGTTT AGTCTTATTA
TTTTGGTTGT TGTATCAAAT CGTATTACAA AGAAAAGCCT TACTTAAATT TTTAGCGAGT
AATGAAATAT TGACTCGTAA TGAGAACGTG ATTAATAAAG TTGAGCAATT CTTACCCAGT
TCAGTGTCGA CGAATGCAGA CGATGTTGAG CGAAAATTTT ACTCTGCGGG TTTTTATCAA
TTCAAATGGG CTCATTTATA TATGCCTGCT AAATATGCAG CAGCTGCAAT AGGTGGAGTG
ACTATTTATT GGTTGAGTAG AAGCGATACG GATCCAAAAG AAATCATTGC TTATATGTGT
ATATGGCTCG TTATTTGTAT CTTGATACCT GATCTGATCT TAAATTCTCG TATTAAAACG
TTACGGGATA AATTATCTAG CCAGTTGCCA TATTTGCTCG ATCTTTTGGC CATGTGCGTT
CATACTGGTA TGACGATTGA GTCATCAATG GCTTATCTTG CTAAAGAAAT GCGTGGTTTT
GATAAAGATC TCGCACATAT GGTAAGCCGC ACAAATGATC GTGCTCGAAT TGTGGGATTA
AGCGTGGCAT TGGATGAGCT TTACATCAAA GTGCCAACAA ATGAAATGCG AAGTTTTGTT
ATGACCTTAA AGCAAAGCTT GCATTACGGT AGCTCCATTT ATGGAATTTT AAACACATTA
GCAGAAGATA TTCGTAATGT ACGTCTTCTT TCACTGGAAG AAAAAGTAGG TAAGTTAGCC
GCTAAAATGT CGGTACCATT GATTTTGTTT ATTATGATAC CGGTTGTAAT TCTAATTGCT
GCGCCAGGAA TAATGAGGAT GATGTCAGGT GTGTATTAA
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| Protein sequence | MITSSVVLYA VLVSFGLVLL FWLLYQIVLQ RKALLKFLAS NEILTRNENV INKVEQFLPS
SVSTNADDVE RKFYSAGFYQ FKWAHLYMPA KYAAAAIGGV TIYWLSRSDT DPKEIIAYMC
IWLVICILIP DLILNSRIKT LRDKLSSQLP YLLDLLAMCV HTGMTIESSM AYLAKEMRGF
DKDLAHMVSR TNDRARIVGL SVALDELYIK VPTNEMRSFV MTLKQSLHYG SSIYGILNTL
AEDIRNVRLL SLEEKVGKLA AKMSVPLILF IMIPVVILIA APGIMRMMSG VY
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