| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0319 |
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| Symbol | rpoS |
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| ID | 6961775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 359989 |
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| End bp | 360870 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 643381620 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_002264662 |
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| Protein GI | 209809124 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.260634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAATA TAGAATGTTC AAAAAAGGAA GAACCAAGAA ACAGCATTGA TGCTTACTCA
TTATATTTGA AAGAAATAAA TAAATATAAG CTTCTAACTG CAAGTGAGGA ATTGGAACAT
AGTCGTAACT ATTTATCTGG AGATTTAAAA TCAAGAAATG TGTTAATTGA GTCTAATCTA
AGGCTTGTTG TTAAAATTGC CAATAAATAT CGTCATCGTA ATCAAAGAGA ACTTGCCCCT
TTAGATATTA TTGAAGAGGG AAATCTTGGT TTAATGAAAG CCGTGAATAA ATTTGACCCT
GAATTAGGCT ACCGATTTTC TACTTACGCG GTATGGTGGA TAAAAGAATC CATTGAAAGC
GCCTTATTTA ATCATTCACG TACGGTTCGC CTACCTGTTC ATATAACAAA AGAACTTAAT
GTGTACTTAA GAGCGGCAAG AGATCTGTCT AGAACACTTA AAAAAGAACC TTCCATCAGT
GAAATATCCG TCCACTGTAA TAAAGACTAT AAAAAAGTTA ATAAAATCTT AGGTTTAGTT
CCTAGTTCAT CAACCTGTCA TTCTGCTTCT AGTGATGATA TGTCATCGAA TTTAATTGAA
TTGTGTGCCG ATGATCATGA ACAAGAGCCG GCTCAATCCT TATCAAAGTC TAATTTAGAA
AGTAACCTAT CATCATGGTT AAATTTGCTT CAATGCAGAG AAAAGCAAAT AATCATCAAT
CGTTATGGTT TGTTTGGTAC TGATGTAAAA ACCTTAGAGG AACTAGGCCA AGATCTTCAA
TTATCTAAAG AAAGAGTTAG ACAGATACAA ACAGAAACAC TCACTAAGCT TAATACTATA
TTTAAAAAAA ATAAGTTAAA TTTAGAAATT GCTTTAAATT AG
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| Protein sequence | MLNIECSKKE EPRNSIDAYS LYLKEINKYK LLTASEELEH SRNYLSGDLK SRNVLIESNL
RLVVKIANKY RHRNQRELAP LDIIEEGNLG LMKAVNKFDP ELGYRFSTYA VWWIKESIES
ALFNHSRTVR LPVHITKELN VYLRAARDLS RTLKKEPSIS EISVHCNKDY KKVNKILGLV
PSSSTCHSAS SDDMSSNLIE LCADDHEQEP AQSLSKSNLE SNLSSWLNLL QCREKQIIIN
RYGLFGTDVK TLEELGQDLQ LSKERVRQIQ TETLTKLNTI FKKNKLNLEI ALN
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