| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0253 |
|---|
| Symbol | |
|---|
| ID | 6961717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 280345 |
|---|
| End bp | 281604 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643381560 |
|---|
| Product | putative 3-hydroxy-3-methylglutaryl coenzyme a reductase |
|---|
| Protein accession | YP_002264602 |
|---|
| Protein GI | 209809064 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1257] Hydroxymethylglutaryl-CoA reductase |
|---|
| TIGRFAM ID | [TIGR00533] 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0262386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAAT TGAATCTGCA CCGCCGTGAT TATGTCTCTA TCTTAGGGGG GGATATCTCT
GCAGATGAAT TAGAGCAAAT GCTCAATCCT CACTTTGATA AACCGACAAA TAAACTGACA
CCAAGCCCTT ACTTAACCGA TAAAAACATT ACTCGTCGTT GGGATAAATT GGCTAATCCT
GCGTTGCAAG CTGAGTTGCT TGATGTGCAT ACTCAAGCAC AATCACATGT TTATGAAAAA
AACATCGAAC ACTTCATTGG CACAGTAAAA ATTCCTGTCG GACTTGCTGG ACCTTTGCGT
GTGAATGGCC TATTTGCCAA AGGCGATTAT TTGGTTCCAT TAGCGACCAC AGAAGCCGCC
TTAGTAGCCT CTTATAACCG TGGAGCACAA CTCATTACTG CGTGTGGCGG AGCCAGTGCC
ATGTTATTAA ATGAAGGCGT CACTCGTACC CCTGCCTTTG CCTTTTATAA CTTAGCCGAA
GCCGGACAAT TTGTGACGTG GGCCGTTACT CAATACGATA CCTTCAAGCA ATTGGCTGAA
GCCACTACCT CTCACGGTAA ACTCAGCGAC ATTAATATCA GCATTGAAGG CAATCATGTC
TATTTGGTAT TTGAGTTTTT AACCGGAGAT GCATCAGGCC AAAACATGGT GACCATCGCG
ACTAATGCGA TTTTTAACTA CATCATAGAT AACTCACCCA TCGCTTCTGA AAATGCCTAT
TTAGATGGCA ACTTATCAGG CGATAAAAAA GCAAGTAGCC AGTCTCTCCG CAGTGTTCGC
GGTAAAAAGG TAACGGCGGA AGTGCATGTT CCCGCCGAAC TGGTTAAGAA ATACCTGCAC
ACTACACCAG AAAAAATGAT GCAATTTACT CAAATGAGTA CGGTTGGAGC AACGCTCAGT
GGCACAATTG GCATTAATGC TCATTACGCG AATGCACTTG CGGCGCTCTA TATTGCGTGT
GGCCAAGATG CCGCGTGCGT GGCAGAATCG GCTGTGGGGA TGACTCGTAT AGAAGTAAAT
AGAGATGGTG GTTTATACGC AAGTGTGACG CTACCAAATC TAATGCTTGG CACGGTTGGC
GGTGGAACGG GATTACCGAG CCAAAAAGCG TGTTTAGAAC TAATGGGCTT ATATGGCTCA
GGTAAATCAC AAGCACTTGC TGAAGTATGT GCCACGCTAT GTTTAGCAGG AGAGCTGTCT
ATTGTCGGTG CTTTCTGTGC CGGTCATTTT TCACGAGCGC ATCATAAATT GGCTCGCTAG
|
|---|
| Protein sequence | MPKLNLHRRD YVSILGGDIS ADELEQMLNP HFDKPTNKLT PSPYLTDKNI TRRWDKLANP
ALQAELLDVH TQAQSHVYEK NIEHFIGTVK IPVGLAGPLR VNGLFAKGDY LVPLATTEAA
LVASYNRGAQ LITACGGASA MLLNEGVTRT PAFAFYNLAE AGQFVTWAVT QYDTFKQLAE
ATTSHGKLSD INISIEGNHV YLVFEFLTGD ASGQNMVTIA TNAIFNYIID NSPIASENAY
LDGNLSGDKK ASSQSLRSVR GKKVTAEVHV PAELVKKYLH TTPEKMMQFT QMSTVGATLS
GTIGINAHYA NALAALYIAC GQDAACVAES AVGMTRIEVN RDGGLYASVT LPNLMLGTVG
GGTGLPSQKA CLELMGLYGS GKSQALAEVC ATLCLAGELS IVGAFCAGHF SRAHHKLAR
|
|---|
| |